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scnpilot_solids2_trim150_scaffold_1232_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1232_curated_1
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..168
DNA (168bp) protein (56aa)
UPI0003D04A7D related cluster n=1 Tax=unknown RepID=UPI0003D04A7D
2-methylcitrate dehydratase {ECO:0000313|EMBL:ESZ28675.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
mmge/prpd family protein
scnpilot_solids2_trim150_scaffold_1232_curated_2
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(202..816)
DNA (615bp) protein (205aa)
Molybdenum cofactor guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907}; Short=MoCo guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316};; EC=2.7.7.77 {ECO:0000256|HAMAP-Rule:MF_00316, ECO:0000256|SAAS:SAAS00049907};; GTP:molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Mo-MPT guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin guanylyltransferase {ECO:0000256|HAMAP-Rule:MF_00316}; Molybdopterin-guanine dinucleotide synthase {ECO:0000256
mobA; molybdopterin-guanine dinucleotide biosynthesis protein MobA; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77]
Molybdenum cofactor guanylyltransferase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SVP5_9BRAD
scnpilot_solids2_trim150_scaffold_1232_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(813..1919)
DNA (1107bp) protein (369aa)
sodium:proton antiporter n=1 Tax=Methylobacterium sp. 88A RepID=UPI00037CB4BE
ATPase-like, ParA/MinD {ECO:0000313|EMBL:KFC75344.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
MRP protein-like protein; K03593 ATP-binding protein involved in chromosome partitioning
scnpilot_solids2_trim150_scaffold_1232_curated_4
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2069..3334
DNA (1266bp) protein (422aa)
molybdenum cofactor synthesis domain-containing protein; K03750 molybdopterin molybdotransferase [EC:2.10.1.1]
Molybdenum cofactor synthesis domain protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9W6N2_METEP
Molybdenum cofactor synthesis domain protein {ECO:0000313|EMBL:ABY31238.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
scnpilot_solids2_trim150_scaffold_1232_curated_5
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3378..3611
DNA (234bp) protein (78aa)
SirA family protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
SirA family protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UJ34_METS4
SirA family protein {ECO:0000313|EMBL:ACA20273.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids2_trim150_scaffold_1232_curated_6
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3611..3985
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PHF2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KFG69905.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1232_curated_7
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4013..5584)
DNA (1572bp) protein (524aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JZK5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE75784.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
scnpilot_solids2_trim150_scaffold_1232_curated_8
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5665..6666)
DNA (1002bp) protein (334aa)
ABC-type branched-chain amino acid transport system, permease component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW26_9RHIZ
ABC-type branched-chain amino acid transport system, permease component {ECO:0000313|EMBL:EIM28168.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_1232_curated_9
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6663..7586)
DNA (924bp) protein (308aa)
ABC transporter permease protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRP2_9PROT
ABC transporter permease {ECO:0000313|EMBL:KGM34607.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
scnpilot_solids2_trim150_scaffold_1232_curated_10
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7816..8715)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TS40_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE09278.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1232_curated_11
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8712..9443)
DNA (732bp) protein (244aa)
Transcription regulator n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2KRF8_9PROT
GntR family transcriptional regulator {ECO:0000313|EMBL:KJE34330.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_1232_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9580..11307
DNA (1728bp) protein (576aa)
ilvD3; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxyacid dehydratase/phosphogluconate dehydratase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYJ9_9RHIZ
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:KFC66770.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_1232_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11481..12533
DNA (1053bp) protein (351aa)
Putative Type III polyketide synthase chalcone synthase {ECO:0000313|EMBL:KFC69224.1}; EC=2.3.1.74 {ECO:0000313|EMBL:KFC69224.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
chalcone synthase protein (EC:2.3.1.74)
chalcone synthase n=1 Tax=Rhizobium leguminosarum RepID=UPI00036FAD01
scnpilot_solids2_trim150_scaffold_1232_curated_14
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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12530..13024
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FS36_PHAMO
Uncharacterized protein {ECO:0000313|EMBL:CCG41174.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
isoprenylcysteine carboxyl methyltransferase
scnpilot_solids2_trim150_scaffold_1232_curated_15
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13178..13792
DNA (615bp) protein (205aa)
UPI0003CE3A2D related cluster n=1 Tax=unknown RepID=UPI0003CE3A2D
Uncharacterized protein {ECO:0000313|EMBL:ESY87738.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1232_curated_16
Thalassospira xiamenensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13798..14679)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003806021
SMP-30/gluconolaconase/LRE-like region superfamily protein {ECO:0000313|EMBL:AJD52837.1}; TaxID=1123366 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira xiamenensis M-5 = DSM 17429.;"
SMP-30/gluconolaconase/LRE domain-containing protein
scnpilot_solids2_trim150_scaffold_1232_curated_17
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14771..15754
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JWA9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE69520.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1232_curated_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15772..16575
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A6699
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EIM29021.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
udh; uronate dehydrogenase
scnpilot_solids2_trim150_scaffold_1232_curated_19
unknown

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16663..16812
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1232_curated_20
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16912..17499
DNA (588bp) protein (196aa)
Cog3644, uncharacterized protein conserved in bacteria n=2 Tax=Ralstonia solanacearum RepID=B5SDL6_RALSL
Cog3644, uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CEJ17548.1}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
hypothetical protein; K09965 hypothetical protein
scnpilot_solids2_trim150_scaffold_1232_curated_21
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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17599..18066
DNA (468bp) protein (156aa)
FAD dependent oxidoreductase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RJ84_9PROT
FAD dependent oxidoreductase {ECO:0000313|EMBL:EFH12634.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
FAD dependent oxidoreductase
Displaying 21 items

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