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scnpilot_solids2_trim150_scaffold_555_curated

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_555_curated_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..721)
DNA (720bp) protein (240aa)
ornithine cyclodeaminase/mu-crystallin; K01750 ornithine cyclodeaminase [EC:4.3.1.12]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F3BA7B
Putative ornithine cyclodeaminase, mu-crystallin {ECO:0000313|EMBL:KFC66550.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_555_curated_2
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(782..1243)
DNA (462bp) protein (154aa)
Oxidoreductase (Flavoprotein subunit FAD-binding domain) {ECO:0000313|EMBL:KFC71707.1}; EC=1.5.3.1 {ECO:0000313|EMBL:KFC71707.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
FAD dependent oxidoreductase; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F5698C
scnpilot_solids2_trim150_scaffold_555_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1949..3340)
DNA (1392bp) protein (464aa)
Putative Pyridine nucleotide-disulfide oxidoreductase family protein {ECO:0000313|EMBL:KFC71706.1}; EC=1.-.-.- {ECO:0000313|EMBL:KFC71706.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oxidoreductase; Pyridine nucleotide-disulphide subunit (ooxA) (EC:1.-.-.-)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030764AE
scnpilot_solids2_trim150_scaffold_555_curated_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3337..3651)
DNA (315bp) protein (105aa)
ferredoxin n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002375780
Oxydoreductase, 2Fe-2S ferredoxin like subunit {ECO:0000313|EMBL:KFC71705.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
2Fe-2S iron-sulfur cluster binding domain protein
scnpilot_solids2_trim150_scaffold_555_curated_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3746..4567)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000367AB38
Transcriptional regulator {ECO:0000313|EMBL:KFC71704.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Pca regulon regulatory protein
scnpilot_solids2_trim150_scaffold_555_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4693..5472
DNA (780bp) protein (260aa)
Putative enoyl-CoA hydratase {ECO:0000313|EMBL:KFC71703.1}; EC=4.2.1.17 {ECO:0000313|EMBL:KFC71703.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
enoyl-CoA hydratase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000377F6E8
enoyl-CoA hydratase/isomerase
scnpilot_solids2_trim150_scaffold_555_curated_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5527..6594
DNA (1068bp) protein (356aa)
ABC transporter substrate-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DD9D3C
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:KFC71702.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative Spermidine/putrescine ABC transpoter (substrate binding protein)
scnpilot_solids2_trim150_scaffold_555_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6614..7696
DNA (1083bp) protein (361aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036EFAD9
ABC-type spermidine/putrescine transport system, ATPase component {ECO:0000313|EMBL:KFC71701.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
putative spermidine/putrescine ABC transporter,(ATP-binding protein)
scnpilot_solids2_trim150_scaffold_555_curated_9
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7693..9447
DNA (1755bp) protein (585aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000302AB9A
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:KFC71700.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport systems inner membrane component
scnpilot_solids2_trim150_scaffold_555_curated_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9466..10983
DNA (1518bp) protein (506aa)
Putative crotonobetaine/carnitine-CoA ligase {ECO:0000313|EMBL:KFC71699.1}; EC=6.2.1.26 {ECO:0000313|EMBL:KFC71699.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FEF76B
amP-dependent synthetase and ligase
scnpilot_solids2_trim150_scaffold_555_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10980..12059
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E495CB
Uncharacterized protein {ECO:0000313|EMBL:KFC71698.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_555_curated_12
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12194..13477
DNA (1284bp) protein (428aa)
Oxidoreductase n=1 Tax=Halomonas sp. HAL1 RepID=G4F4D7_9GAMM
Oxidoreductase {ECO:0000313|EMBL:KEQ04270.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
putative oxidoreductase
scnpilot_solids2_trim150_scaffold_555_curated_13
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13661..14371)
DNA (711bp) protein (237aa)
Putative transferase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HYC3_BORPD
hypothetical protein
Putative transferase {ECO:0000313|EMBL:CAP40718.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_solids2_trim150_scaffold_555_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14418..15296)
DNA (879bp) protein (293aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D47_RHOPB
Inner-membrane translocator {ECO:0000313|EMBL:KFC75876.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
inner-membrane translocator
scnpilot_solids2_trim150_scaffold_555_curated_15
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15289..16101)
DNA (813bp) protein (271aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D46_RHOPB
ABC transporter related protein {ECO:0000313|EMBL:KFC75877.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter-like protein
scnpilot_solids2_trim150_scaffold_555_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16098..17093)
DNA (996bp) protein (332aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D45_RHOPB
Inner-membrane translocator {ECO:0000313|EMBL:KFC75878.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
inner-membrane translocator
scnpilot_solids2_trim150_scaffold_555_curated_17
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17062..17772)
DNA (711bp) protein (237aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D44_RHOPB
ABC transporter related protein {ECO:0000313|EMBL:KFC75879.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter-like protein
scnpilot_solids2_trim150_scaffold_555_curated_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17785..18924)
DNA (1140bp) protein (380aa)
Extracellular ligand-binding receptor n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D43_RHOPB
Extracellular ligand-binding receptor {ECO:0000313|EMBL:KFC75880.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
extracellular ligand-binding receptor
scnpilot_solids2_trim150_scaffold_555_curated_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18952..20502)
DNA (1551bp) protein (517aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000363B761
hyuB; putative hydantoinase B
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
scnpilot_solids2_trim150_scaffold_555_curated_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20506..22572)
DNA (2067bp) protein (689aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000364FE01
hyuA; putative hydantoinase A
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
scnpilot_solids2_trim150_scaffold_555_curated_21
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22587..23390)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037E3338
IclR family transcriptional regulator {ECO:0000313|EMBL:EKX82002.1}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;"
IclR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_555_curated_22
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23967..24353
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2QK17_9RHIZ
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:EUB98228.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
cupin 2 barrel-domain containing protein
scnpilot_solids2_trim150_scaffold_555_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24650..26452)
DNA (1803bp) protein (601aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037A5EDC
Putative single-strand DNA-specific exonuclease {ECO:0000313|EMBL:KFC75052.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_555_curated_24
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26921..28777
DNA (1857bp) protein (619aa)
Putative methyl-accepting chemotaxis protein (MCP) with multiple PAS domains n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YP70_BRASO
Putative methyl-accepting chemotaxis protein MCP {ECO:0000313|EMBL:KFC67602.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
scnpilot_solids2_trim150_scaffold_555_curated_25
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29066..29839)
DNA (774bp) protein (258aa)
aspartyl/asparaginyl-beta-hydroxylase; K12979 beta-hydroxylase [EC:1.14.11.-]
OlsC n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PXY3_9RHIZ
OlsC {ECO:0000313|EMBL:CCM76242.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
scnpilot_solids2_trim150_scaffold_555_curated_26
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29997..30839)
DNA (843bp) protein (281aa)
short-chain dehydrogenase/reductase SDR; K00034 glucose 1-dehydrogenase [EC:1.1.1.47]
Glucose 1-dehydrogenase {ECO:0000313|EMBL:ABQ28763.1}; EC=1.1.1.47 {ECO:0000313|EMBL:ABQ28763.1};; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
Glucose 1-dehydrogenase n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FT31_ACICJ
scnpilot_solids2_trim150_scaffold_555_curated_27
bacterium YEK0313, Bacteria

Not on your lists

comp(30912..32393)
DNA (1482bp) protein (494aa)
Putative sugar transport protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LE79_9RHOB
Inner membrane metabolite transport protein YgcS {ECO:0000313|EMBL:CEJ11630.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
major facilitator transporter
scnpilot_solids2_trim150_scaffold_555_curated_28
Commensalibacter sp. MX01, Commensalibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32461..32991
DNA (531bp) protein (177aa)
UPI0003D38EA4 related cluster n=1 Tax=unknown RepID=UPI0003D38EA4
Phage protein {ECO:0000313|EMBL:EUK19370.1}; TaxID=1208583 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae.;" source="Commensalibacter sp. MX01.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_555_curated_29
bacterium YEK0313, Bacteria

Not on your lists

33119..34537
DNA (1419bp) protein (473aa)
Amidohydrolase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WRW1_9RHIZ
p-aminobenzoyl-glutamate hydrolase subunit B {ECO:0000313|EMBL:CEJ15539.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
amidohydrolase; K12941 aminobenzoyl-glutamate utilization protein B
scnpilot_solids2_trim150_scaffold_555_curated_30
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34721..35026
DNA (306bp) protein (102aa)
Arabinose efflux permease family protein n=1 Tax=Burkholderia sp. BT03 RepID=J3B0X3_9BURK
MFS transporter {ECO:0000313|EMBL:KJB91086.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
putative permease of the major facilitator superfamily MFS_1; K08169 MFS transporter, DHA2 family, multidrug resistance protein
Displaying 30 items

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