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scnpilot_solids2_trim150_scaffold_884_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_884_curated_1
unknown

Not on your lists

2..88
DNA (87bp) protein (29aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_884_curated_2
unknown

Not on your lists

176..493
DNA (318bp) protein (106aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_884_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(534..2672)
DNA (2139bp) protein (713aa)
oligopeptidase B; K01354 oligopeptidase B [EC:3.4.21.83]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037451EC
Peptidase S9, prolyl oligopeptidase {ECO:0000313|EMBL:KFC73414.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_884_curated_4
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2945..3358
DNA (414bp) protein (138aa)
transcriptional regulator n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EADEFF
MucR family transcriptional regulator {ECO:0000313|EMBL:KFG66606.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
mucR; transcriptional regulator
scnpilot_solids2_trim150_scaffold_884_curated_5
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3624..4010
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003624AB6
Chromosomal replication initiator protein DnaA {ECO:0000313|EMBL:AHB49059.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
scnpilot_solids2_trim150_scaffold_884_curated_6
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4087..4884
DNA (798bp) protein (266aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003753896
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK81404.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
scnpilot_solids2_trim150_scaffold_884_curated_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5060..5479)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000379F3D9
Sulfur acceptor protein SufE for iron-sulfur cluster assembly {ECO:0000313|EMBL:EJW11325.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Fe-S metabolism associated SufE; K02426 cysteine desulfuration protein SufE
scnpilot_solids2_trim150_scaffold_884_curated_8
unknown

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comp(5537..5866)
DNA (330bp) protein (110aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_884_curated_9
bacterium YEK0313, Bacteria

Not on your lists

6256..7956
DNA (1701bp) protein (567aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
multi-sensor signal transduction histidine kinase; K11357 two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3]
Multi-sensor signal transduction histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IUA0_RHOP2
scnpilot_solids2_trim150_scaffold_884_curated_10
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7953..8759
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P2Z6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAV40605.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_884_curated_11
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8761..9108
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036C5265
Methylobacterium aquaticum plasmid pMaq22A_1p DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ49613.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_884_curated_12
unknown

Not on your lists

9340..9558
DNA (219bp) protein (73aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_884_curated_13
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9598..10437
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1Z8Z3_METPB
Uncharacterized protein {ECO:0000313|EMBL:KFC73405.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_884_curated_14
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10569..11120)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QN81_METTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA04410.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
scnpilot_solids2_trim150_scaffold_884_curated_15
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11117..11695)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00035F018B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK50611.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_solids2_trim150_scaffold_884_curated_16
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11732..13990)
DNA (2259bp) protein (753aa)
penicillin-binding protein (EC:2.4.1.129); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]
Penicillin-binding protein, 1A family {ECO:0000313|EMBL:ACK50610.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ACK50610.1};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
penicillin-binding protein 1A n=1 Tax=Methylobacterium sp. 77 RepID=UPI00037AB4AC
scnpilot_solids2_trim150_scaffold_884_curated_17
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14419..15528
DNA (1110bp) protein (370aa)
Putative acyltransferase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YEY2_9BRAD
Putative acyltransferase {ECO:0000313|EMBL:EHR01443.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
acyltransferase
scnpilot_solids2_trim150_scaffold_884_curated_18
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15624..16190
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000304800E
Chromate transporter {ECO:0000313|EMBL:KJC58189.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
multidrug efflux transporter protein; K07240 chromate transporter
scnpilot_solids2_trim150_scaffold_884_curated_19
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16187..16720
DNA (534bp) protein (178aa)
Chromate transport protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0A8S8_COLFT
chrA; chromate transport protein; K07240 chromate transporter
Chromate transport protein {ECO:0000313|EMBL:AEK61791.1}; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
scnpilot_solids2_trim150_scaffold_884_curated_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16885..18162
DNA (1278bp) protein (426aa)
MFS transporter n=1 Tax=Hoeflea sp. 108 RepID=UPI00036FAAB8
MFS transporter {ECO:0000313|EMBL:KDP75840.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
major facilitator superfamily protein; K03449 MFS transporter, CP family, cyanate transporter
scnpilot_solids2_trim150_scaffold_884_curated_21
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18224..18541)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000382E243
Blue (Type 1) copper domain protein {ECO:0000313|EMBL:EFI53410.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
amicyanin protein
scnpilot_solids2_trim150_scaffold_884_curated_22
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18556..19080)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IFB9_METNO
hypothetical protein; K08995 putative membrane protein
Uncharacterized protein {ECO:0000313|EMBL:ACL57654.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_884_curated_23
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19167..19862)
DNA (696bp) protein (232aa)
RNA polymerase sigma factor n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TYC3_9BRAD
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_solids2_trim150_scaffold_884_curated_24
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20048..21247)
DNA (1200bp) protein (400aa)
Flagellin domain protein n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KDW0_METEX
Flagellin domain protein {ECO:0000313|EMBL:EHP94265.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_884_curated_25
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21581..22984
DNA (1404bp) protein (468aa)
Magnesium transporter n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IFV3_METNO
magnesium transporter; K06213 magnesium transporter
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_884_curated_26
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23063..23584
DNA (522bp) protein (174aa)
vanillate O-demethylase oxidoreductase VanB n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E8B7C9
Uncharacterized protein {ECO:0000313|EMBL:EJL51413.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
activator of Hsp90 ATPase 1 family protein
scnpilot_solids2_trim150_scaffold_884_curated_27
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23584..23781
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DF4E3D
Putative transcriptional regulator {ECO:0000313|EMBL:EJL34242.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
ArsR family transcriptional regulator
Displaying 27 items

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