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scnpilot_solids2_trim150_scaffold_390_curated

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_390_curated_1
unknown

Not on your lists

comp(3..737)
DNA (735bp) protein (245aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_390_curated_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

872..1438
DNA (567bp) protein (189aa)
Soluble lytic murein transglycosylase-like protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUU7_9RHIZ
Soluble lytic murein transglycosylase-like protein {ECO:0000313|EMBL:EIM27739.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
lytic transglycosylase, catalytic
scnpilot_solids2_trim150_scaffold_390_curated_3
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1486..2790
DNA (1305bp) protein (435aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3]
homoserine dehydrogenase n=1 Tax=Methylobacterium sp. 88A RepID=UPI00037D2012
scnpilot_solids2_trim150_scaffold_390_curated_4
unknown

Not on your lists

3056..3313
DNA (258bp) protein (86aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_390_curated_5
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3354..4040
DNA (687bp) protein (229aa)
Peptidase C26 n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V404_9RHIZ
Peptidase C26 {ECO:0000313|EMBL:ENN88575.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
class I glutamine amidotransferase family protein
scnpilot_solids2_trim150_scaffold_390_curated_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4138..5133
DNA (996bp) protein (332aa)
glpX; fructose 1,6-bisphosphatase II; K02446 fructose-1,6-bisphosphatase II [EC:3.1.3.11]
fructose 1,6-bisphosphatase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E19F20
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
scnpilot_solids2_trim150_scaffold_390_curated_7
bacterium YEK0313, Bacteria

Not on your lists

5452..5895
DNA (444bp) protein (148aa)
Acetyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YY15_9RHIZ
N-acetylglutamate synthase {ECO:0000313|EMBL:CEJ13715.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
N-acetyltransferase GCN5
scnpilot_solids2_trim150_scaffold_390_curated_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5913..6839
DNA (927bp) protein (309aa)
Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I2G5_9BRAD
Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) {ECO:0000313|EMBL:KFC75153.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_390_curated_9
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7116..8336)
DNA (1221bp) protein (407aa)
aminotransferase; K14261 alanine-synthesizing transaminase [EC:2.6.1.-]
Aminotransferase class I and II n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ITZ8_METNO
Aminotransferase class I and II {ECO:0000313|EMBL:ACL60856.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_390_curated_10
unknown

Not on your lists

comp(8476..8928)
DNA (453bp) protein (151aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_390_curated_11
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9264..10808
DNA (1545bp) protein (515aa)
poly(R)-hydroxyalkanoic acid synthase; K03821 polyhydroxyalkanoate synthase [EC:2.3.1.-]
Poly(R)-hydroxyalkanoic acid synthase, class I n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8ITZ6_METNO
Poly(R)-hydroxyalkanoic acid synthase, class I {ECO:0000313|EMBL:ACL60854.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_390_curated_12
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10851..11414
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YHF5_9BRAD
Damage-inducible protein DinB {ECO:0000313|EMBL:KJC46678.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
putative damage inducible protein
scnpilot_solids2_trim150_scaffold_390_curated_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11591..12916)
DNA (1326bp) protein (442aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037F92E9
Long-chain fatty acid transport protein {ECO:0000313|EMBL:EIM28851.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
aromatic hydrocarbon degradation membrane protein; K06076 long-chain fatty acid transport protein
scnpilot_solids2_trim150_scaffold_390_curated_14
bacterium YEK0313, Bacteria

Not on your lists

13392..14261
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D82552
Ureidoglycolate lyase {ECO:0000313|EMBL:CEJ13918.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
5-carboxymethyl-2-hydroxymuconate delta-isomerase
scnpilot_solids2_trim150_scaffold_390_curated_15
bacterium YEK0313, Bacteria

Not on your lists

14311..15546
DNA (1236bp) protein (412aa)
Putative 2-aminoadipate transaminase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TSV4_9BRAD
2-aminoadipate transaminase {ECO:0000313|EMBL:CEJ14831.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative aminotransferase
scnpilot_solids2_trim150_scaffold_390_curated_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15600..16526)
DNA (927bp) protein (309aa)
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003164653
scnpilot_solids2_trim150_scaffold_390_curated_17
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16772..18160)
DNA (1389bp) protein (463aa)
CoA-transferase family III, caib/baif family protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JYI9_9PROT
CoA-transferase family III, caib/baif family protein {ECO:0000313|EMBL:EKE70305.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
L-carnitine dehydratase/bile acid-inducible protein F
scnpilot_solids2_trim150_scaffold_390_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18260..18733)
DNA (474bp) protein (158aa)
30S ribosomal protein S9 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RS9_PARL1
rpsI; 30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000255|HAMAP-Rule:MF_00532}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_solids2_trim150_scaffold_390_curated_19
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18733..19197)
DNA (465bp) protein (155aa)
50S ribosomal protein L13 n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=RL13_METNO
rplM; 50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
50S ribosomal protein L13 {ECO:0000255|HAMAP-Rule:MF_01366}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_390_curated_20
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19384..19833)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F62486
Phenylacetic acid degradation protein {ECO:0000313|EMBL:KFG68522.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
thioesterase superfamily protein
scnpilot_solids2_trim150_scaffold_390_curated_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19919..20770
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002EF431C
Enoyl CoA hydratase {ECO:0000313|EMBL:KFC75029.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
enoyl-CoA hydratase/isomerase
scnpilot_solids2_trim150_scaffold_390_curated_22
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20905..21801)
DNA (897bp) protein (299aa)
Permease n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJL0_9RHIZ
Permease {ECO:0000313|EMBL:EHK59070.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
permease; K15270 S-adenosylmethionine uptake transporter
scnpilot_solids2_trim150_scaffold_390_curated_23
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21966..22493
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E11497
Uncharacterized protein {ECO:0000313|EMBL:KFC75027.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
CoA-binding domain-containing protein; K06929
scnpilot_solids2_trim150_scaffold_390_curated_24
unknown

Not on your lists

22551..23048
DNA (498bp) protein (166aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_390_curated_25
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23157..24437
DNA (1281bp) protein (427aa)
O-acetylhomoserine aminocarboxypropyltransferase; K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine/O-acetylserine sulfhydrylase {ECO:0000313|EMBL:ACA17074.1}; EC=2.5.1.49 {ECO:0000313|EMBL:ACA17074.1};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
O-acetylhomoserine aminocarboxypropyltransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E85319
scnpilot_solids2_trim150_scaffold_390_curated_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24604..25704)
DNA (1101bp) protein (367aa)
Heme A synthase {ECO:0000256|HAMAP-Rule:MF_01665}; Short=HAS {ECO:0000256|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000256|HAMAP-Rule:MF_01665}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI0003736C46
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15
scnpilot_solids2_trim150_scaffold_390_curated_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25816..26031
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NG65_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27991.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_390_curated_28
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26152..27285
DNA (1134bp) protein (378aa)
acyl-CoA N-acyltransferase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00037BFA06
putative acyl-CoA N-acyltransferase-like protein
Uncharacterized protein {ECO:0000313|EMBL:ACB22331.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
scnpilot_solids2_trim150_scaffold_390_curated_29
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27288..29519)
DNA (2232bp) protein (744aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IK47_METNO
Succinoglycan transport protein {ECO:0000313|EMBL:KFC75020.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
lipopolysaccharide biosynthesis protein
scnpilot_solids2_trim150_scaffold_390_curated_30
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29720..30286
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003667FDC
Polysaccharide export protein {ECO:0000313|EMBL:KFC75019.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
polysaccharide export protein; K01991 polysaccharide export outer membrane protein
Displaying items 1-30 of 58 in total

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