ggKbase home page

scnpilot_solids2_trim150_scaffold_893_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_893_curated_1
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..347
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IAZ4_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL55387.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
scnpilot_solids2_trim150_scaffold_893_curated_2
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

409..2835
DNA (2427bp) protein (809aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3]
DNA gyrase subunit B n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003021B97
scnpilot_solids2_trim150_scaffold_893_curated_3
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2867..3664
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U1P9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP61787.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_893_curated_4
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3701..4651
DNA (951bp) protein (317aa)
Putative oxidoreductase, aryl-alcohol dehydrogenase like protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKR0_9RHIZ
Alcohol dehydrogenase {ECO:0000313|EMBL:KFG68565.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
aldo/keto reductase
scnpilot_solids2_trim150_scaffold_893_curated_5
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5021..7300
DNA (2280bp) protein (760aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000371D7C3
hypothetical protein; K14161 protein ImuB
Conserved hypothetical cytosolic protein {ECO:0000313|EMBL:ABF54484.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
scnpilot_solids2_trim150_scaffold_893_curated_6
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7314..10667
DNA (3354bp) protein (1118aa)
dnaE2; error-prone DNA polymerase (EC:2.7.7.7)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902, ECO:0000313|EMBL:CCJ06699.1}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902, ECO:0000313|EMBL:CCJ06699.1};; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
Error-prone DNA polymerase n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q424_METSZ
scnpilot_solids2_trim150_scaffold_893_curated_7
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10824..12215)
DNA (1392bp) protein (464aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F657E7
Uncharacterized protein {ECO:0000313|EMBL:KJB92419.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
peptidase family M20/M25/M40 family protein 5
scnpilot_solids2_trim150_scaffold_893_curated_8
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12341..13318
DNA (978bp) protein (326aa)
NADPH:quinone oxidoreductase n=1 Tax=Pseudomonas thermotolerans RepID=UPI000364C977
alcohol dehydrogenase
NADPH:quinone oxidoreductase {ECO:0000313|EMBL:EZH82922.1}; TaxID=1453503 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes AD6.;"
scnpilot_solids2_trim150_scaffold_893_curated_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13320..13997)
DNA (678bp) protein (226aa)
Hly-III family protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07HN0_RHOP5
Hly-III family protein; K11068 hemolysin III
Hly-III family protein {ECO:0000313|EMBL:ABJ08554.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
scnpilot_solids2_trim150_scaffold_893_curated_10
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14093..15898)
DNA (1806bp) protein (602aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
Elongation factor 4 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUA5_9RHIZ
GTP-binding protein LepA; K03596 GTP-binding protein LepA
scnpilot_solids2_trim150_scaffold_893_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16265..16996
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000380886B
Transcriptional regulator, GntR family {ECO:0000313|EMBL:KFC72802.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_893_curated_12
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17112..19352)
DNA (2241bp) protein (747aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Polyribonucleotide nucleotidyltransferase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=PNP_METNO
scnpilot_solids2_trim150_scaffold_893_curated_13
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19572..19841)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=RS15_XANP2
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids2_trim150_scaffold_893_curated_14
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19997..20836
DNA (840bp) protein (280aa)
Putative aldo/keto reductase n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RX98_9BRAD
Putative aldo/keto reductase {ECO:0000313|EMBL:CCD86575.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
aldo/keto reductase
scnpilot_solids2_trim150_scaffold_893_curated_15
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20960..21574)
DNA (615bp) protein (205aa)
Protein GrpE n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUC7_9RHIZ
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
ribulose-phosphate 3-epimerase; K03687 molecular chaperone GrpE
scnpilot_solids2_trim150_scaffold_893_curated_16
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21650..23146)
DNA (1497bp) protein (499aa)
UTP-GlnB uridylyltransferase, GlnD (EC:2.7.7.59)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D26712
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Displaying 16 items

View Taxonomy