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scnpilot_solids2_trim150_scaffold_2583_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2583_curated_1
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..562
DNA (561bp) protein (187aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003819D09
scnpilot_solids2_trim150_scaffold_2583_curated_2
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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562..1527
DNA (966bp) protein (322aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085804}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00301};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00301};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00301, ECO:0000256|SAAS:SAAS00085809};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
homoserine kinase; K02204 homoserine kinase type II [EC:2.7.1.39]
homoserine kinase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003161BCD
scnpilot_solids2_trim150_scaffold_2583_curated_3
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1524..1985
DNA (462bp) protein (154aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ribonuclease H; K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QJR7_METTR
scnpilot_solids2_trim150_scaffold_2583_curated_4
unknown

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2051..2248
DNA (198bp) protein (66aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2583_curated_5
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2440..3231)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F9C747
Polyamine ABC transporter permease {ECO:0000313|EMBL:EXL10329.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
binding-protein-dependent transport system inner membrane protein; K02053 putative spermidine/putrescine transport system permease protein
scnpilot_solids2_trim150_scaffold_2583_curated_6
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3234..4412)
DNA (1179bp) protein (393aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TGG8_TISMK
ABC transporter permease {ECO:0000313|EMBL:EXL10330.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
potH; binding-protein-dependent transport system inner membrane protein
scnpilot_solids2_trim150_scaffold_2583_curated_7
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4412..5473)
DNA (1062bp) protein (354aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
ABC transporter n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A3362C
potA; putative spermidine/putrescine ABC transporter ATP-binding protein
scnpilot_solids2_trim150_scaffold_2583_curated_8
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5531..6580)
DNA (1050bp) protein (350aa)
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Ochrobactrum anthropi RepID=UPI000287DDC7
extracellular solute-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ABS16423.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
scnpilot_solids2_trim150_scaffold_2583_curated_9
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6723..7619)
DNA (897bp) protein (299aa)
EamA-like transporter family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPX5_9RHIZ
EamA-like transporter family {ECO:0000313|EMBL:EIM26017.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2583_curated_10
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8030..9169
DNA (1140bp) protein (380aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000313BB33
metN; DL-methionine transporter ATP-binding subunit; K02071 D-methionine transport system ATP-binding protein
scnpilot_solids2_trim150_scaffold_2583_curated_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9159..9824
DNA (666bp) protein (222aa)
methionine ABC transporter permease n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D680DE
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:KFC72855.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport system inner membrane protein; K02072 D-methionine transport system permease protein
scnpilot_solids2_trim150_scaffold_2583_curated_12
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10636..10920
DNA (285bp) protein (95aa)
Transcriptional regulator, TetR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCN4_SPHWW
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABQ70050.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_solids2_trim150_scaffold_2583_curated_13
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11004..11615
DNA (612bp) protein (204aa)
Secretion protein HlyD family protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCN5_SPHWW
hypothetical protein; K01993 HlyD family secretion protein
Secretion protein HlyD family protein {ECO:0000313|EMBL:ABQ70051.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Displaying 13 items

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