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scnpilot_solids2_trim150_scaffold_2103_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2103_curated_1
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1208
DNA (1206bp) protein (402aa)
Peptidase M23 n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EQH8_METSB
peptidase M23
Peptidase M23 {ECO:0000313|EMBL:ACK52191.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_solids2_trim150_scaffold_2103_curated_2
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1376..2578)
DNA (1203bp) protein (401aa)
Histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13CM5_RHOPS
histidine kinase
Tax=BJP_IG2103_Dechloromonas_63_51
scnpilot_solids2_trim150_scaffold_2103_curated_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2735..3610)
DNA (876bp) protein (292aa)
gltX; glutamyl-Q tRNA(Asp) synthetase; K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030D94E6
Bradyrhizobium elkanii strain UASWS1015 Contig167, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51036.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
scnpilot_solids2_trim150_scaffold_2103_curated_4
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3625..4275
DNA (651bp) protein (217aa)
HhH-GPD family protein; K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
HhH-GPD family protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EL05_METSB
HhH-GPD family protein {ECO:0000313|EMBL:ACK52033.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_solids2_trim150_scaffold_2103_curated_5
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4336..4986
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036DF058
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase
Phospholipase/Carboxylesterase {ECO:0000313|EMBL:ACK50845.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_solids2_trim150_scaffold_2103_curated_6
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5240..6049)
DNA (810bp) protein (270aa)
HpcH/HpaI aldolase; K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-]
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTH4_9RHIZ
Hydroxyacid aldolase {ECO:0000313|EMBL:KFG67667.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
scnpilot_solids2_trim150_scaffold_2103_curated_7
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6240..6599)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R8F8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESR22451.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2103_curated_8
Methylobacterium oryzae, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6846..7640
DNA (795bp) protein (265aa)
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=693986 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium oryzae CBMB20.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E79DCB
scnpilot_solids2_trim150_scaffold_2103_curated_9
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7717..7962
DNA (246bp) protein (82aa)
phosphoribosylformylglycinamidine synthase subunit PurS (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Brad
Bsl5728 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89IB1_BRADU
scnpilot_solids2_trim150_scaffold_2103_curated_10
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7964..8662
DNA (699bp) protein (233aa)
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064601}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421, ECO:0000256|SAAS:SAAS00064588};; Formylglycinamide ribonucleotide amidotransferase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; Glutaminase PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Phosphoribosylformylglycinamidine synthase subunit I {ECO:0000256|HAMAP-Rule:MF_00421}; TaxID=1096546 species
phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3); K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase 1 n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CJ77_9RHIZ
scnpilot_solids2_trim150_scaffold_2103_curated_11
unknown

Not on your lists

comp(8527..8844)
DNA (318bp) protein (106aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_2103_curated_12
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8863..9510
DNA (648bp) protein (216aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LG16_HALO1
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACY14618.1}; Flags: Precursor;; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
scnpilot_solids2_trim150_scaffold_2103_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9713..11035)
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJ48_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38388.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
von Willebrand factor type A
scnpilot_solids2_trim150_scaffold_2103_curated_14
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11234..13513
DNA (2280bp) protein (760aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formylglycinamide ribonucleotide amidotransferase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; Glutamine amidotransferase PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Phosphoribosylformylglycinamidine synthase subunit II {ECO:0000256|HAMAP-Rule:MF_00420}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacter
phosphoribosylformylglycinamidine synthase II; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
Phosphoribosylformylglycinamidine synthase 2 n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTG9_9RHIZ
scnpilot_solids2_trim150_scaffold_2103_curated_15
bacterium YEK0313, Bacteria

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13545..13778
DNA (234bp) protein (78aa)
YrbA protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE71_PELHB
Transcriptional regulator BolA {ECO:0000313|EMBL:CEJ13701.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2103_curated_16
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13825..14160
DNA (336bp) protein (112aa)
Glutaredoxin n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTG7_9RHIZ
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Putative glutaredoxin family protein
scnpilot_solids2_trim150_scaffold_2103_curated_17
bacterium YEK0313, Bacteria

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comp(14304..14795)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D3C94B
Thiol:disulfide interchange protein TlpA {ECO:0000313|EMBL:CEJ10772.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
redoxin domain-containing protein
scnpilot_solids2_trim150_scaffold_2103_curated_18
Pseudovibrio sp. FO-BEG1, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14896..15447
DNA (552bp) protein (184aa)
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1]
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=911045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. (strain FO-BEG1).;"
argininosuccinate lyase n=1 Tax=Xanthobacteraceae RepID=UPI000371828B
Displaying 18 items

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