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scnpilot_solids2_trim150_scaffold_2677_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2677_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..665)
DNA (663bp) protein (221aa)
Putative Rossmann fold nucleotide-binding protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYH7_9GAMM
putative Rossmann fold nucleotide-binding protein
Putative Rossmann fold nucleotide-binding protein {ECO:0000313|EMBL:AGG90001.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2677_curated_2
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(840..4085)
DNA (3246bp) protein (1082aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344DF29
Oar protein {ECO:0000313|EMBL:KGI78664.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
outer membrane receptor for ferrienterochelin and colicins
scnpilot_solids2_trim150_scaffold_2677_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4356..4967)
DNA (612bp) protein (204aa)
Membrane protein, MarC family n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0F5_9GAMM
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
multiple antibiotic transporter
scnpilot_solids2_trim150_scaffold_2677_curated_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5039..5791)
DNA (753bp) protein (251aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7S1_9GAMM
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EIL95512.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
scnpilot_solids2_trim150_scaffold_2677_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5803..6126)
DNA (324bp) protein (108aa)
Glutaredoxin n=1 Tax=Rhodanobacter denitrificans RepID=I4WYH2_9GAMM
monothiol glutaredoxin, Grx4 family
Glutaredoxin {ECO:0000256|PIRNR:PIRNR005894}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2677_curated_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6239..6817
DNA (579bp) protein (193aa)
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Superoxide dismutase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMC5_9GAMM
superoxide dismutase
scnpilot_solids2_trim150_scaffold_2677_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6951..8111)
DNA (1161bp) protein (387aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhoda
Phosphoribosylaminoimidazole carboxylase ATPase subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WJR1_9GAMM
5-(carboxyamino)imidazole ribonucleotide synthase
scnpilot_solids2_trim150_scaffold_2677_curated_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8108..8611)
DNA (504bp) protein (168aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulv
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VMC3_9GAMM
5-(carboxyamino)imidazole ribonucleotide mutase
scnpilot_solids2_trim150_scaffold_2677_curated_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8674..8952
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYG8_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2677_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9069..11390
DNA (2322bp) protein (774aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WYG7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99705.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF1631)
scnpilot_solids2_trim150_scaffold_2677_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11387..12244
DNA (858bp) protein (286aa)
nicotinate-nucleotide pyrophosphorylase (carboxylating) (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) {ECO:0000313|EMBL:AGG90012.1}; EC=2.4.2.19 {ECO:0000313|EMBL:AGG90012.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Nicotinate-nucleotide pyrophosphorylase (Carboxylating) n=1 Tax=Rhodanobacter denitrificans RepID=M4NIV8_9GAMM
scnpilot_solids2_trim150_scaffold_2677_curated_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12287..12688
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBN6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96877.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF3301)
scnpilot_solids2_trim150_scaffold_2677_curated_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12720..13166)
DNA (447bp) protein (149aa)
ClpXP protease specificity-enhancing factor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBN5_9GAMM
ClpXP protease specificity-enhancing factor {ECO:0000313|EMBL:EIL96876.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
stringent starvation protein B
scnpilot_solids2_trim150_scaffold_2677_curated_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13153..13413)
DNA (261bp) protein (87aa)
Stringent starvation protein A n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBN4_9GAMM
Stringent starvation protein A {ECO:0000313|EMBL:EIL96875.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glutathione S-transferase
Displaying 14 items

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