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scnpilot_solids2_trim150_scaffold_2173_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2173_curated_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..955
DNA (954bp) protein (318aa)
Alpha-glucosidase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRR5_9GAMM
Alpha-glucosidase {ECO:0000313|EMBL:EIM02157.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
family 31 glycosyl hydrolase, alpha-glucosidase
scnpilot_solids2_trim150_scaffold_2173_curated_2

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2124..2504
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q99IT3_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAK28608.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_solids2_trim150_scaffold_2173_curated_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2581..2934
DNA (354bp) protein (118aa)
Transposase, OrfA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPU3_9GAMM
Transposase, OrfA {ECO:0000313|EMBL:EIM01485.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transposase
scnpilot_solids2_trim150_scaffold_2173_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3147..3740
DNA (594bp) protein (198aa)
ISCps3, transposase orfB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPU4_9GAMM
ISCps3, transposase orfB {ECO:0000313|EMBL:EIM01486.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transposase
scnpilot_solids2_trim150_scaffold_2173_curated_5

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4614..4958
DNA (345bp) protein (115aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B0BHG9_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAP48227.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_solids2_trim150_scaffold_2173_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5253..6248)
DNA (996bp) protein (332aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NDC9_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88719.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2173_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6355..7596)
DNA (1242bp) protein (414aa)
Subtilisin-like serine protease n=2 Tax=Rhodanobacter denitrificans RepID=M4ND99_9GAMM
subtilisin-like serine protease
Subtilisin-like serine protease {ECO:0000313|EMBL:AGG88720.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2173_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7718..8209
DNA (492bp) protein (164aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WY34_9GAMM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGG88721.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2173_curated_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8206..8937
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIR9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99360.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2173_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9069..9470
DNA (402bp) protein (134aa)
Lactoylglutathione lyase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQH3_9GAMM
lactoylglutathione lyase-like lyase
Lactoylglutathione lyase-like lyase {ECO:0000313|EMBL:AGG87608.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2173_curated_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9626..10357
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPA0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89041.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Ion channel
scnpilot_solids2_trim150_scaffold_2173_curated_12
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10384..10809
DNA (426bp) protein (142aa)
Conserved domain protein n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PJH6_CELJU
hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ACE84190.1}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp.; cellulosa).;"
scnpilot_solids2_trim150_scaffold_2173_curated_13
unknown

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10951..11010
DNA (60bp) protein (20aa)

This feature has no annotations

Displaying 13 items

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