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scnpilot_solids2_trim150_scaffold_1952_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1952_curated_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..309)
-----------------
DNA (309bp)
protein (103aa)
endothelin-converting enzyme (EC:3.4.24.71)
Putative metalloendopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5K9_9GAMM
Putative metalloendopeptidase {ECO:0000313|EMBL:EIL94750.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_1952_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(433..1110)
-----------------
DNA (678bp)
protein (226aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5L1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94752.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1952_curated_3
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1227..2561
-----------------
DNA (1335bp)
protein (445aa)
Ste24 endopeptidase (EC:3.4.24.84); K06013 STE24 endopeptidase [EC:3.4.24.84]
peptidase n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B6D947
Peptidase M48 family protein {ECO:0000313|EMBL:GAO37913.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
scnpilot_solids2_trim150_scaffold_1952_curated_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2609..3235)
-----------------
DNA (627bp)
protein (209aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY87_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1952_curated_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3329..4033)
-----------------
DNA (705bp)
protein (235aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 PF7_9GAMM">RepID=I4WPF7_9GAMM
Glutathione S-transferase {ECO:0000313|EMBL:EIM01349.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glutathione S-transferase
scnpilot_solids2_trim150_scaffold_1952_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4096..4665)
-----------------
DNA (570bp)
protein (190aa)
aminotransferase n=1 Tax=Dyella ginsengisoli RepID=UPI000345FC01
Nicotinamide mononucleotide transporter PnuC {ECO:0000313|EMBL:EIL94054.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
nicotinamide mononucleotide transporter PnuC
scnpilot_solids2_trim150_scaffold_1952_curated_7
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4662..6839)
-----------------
DNA (2178bp)
protein (726aa)
TonB-dependent siderophore receptor n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZW8_9GAMM
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EIL92759.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
TonB-dependent siderophore receptor
scnpilot_solids2_trim150_scaffold_1952_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6985..8196)
-----------------
DNA (1212bp)
protein (404aa)
Putative homoserine kinase type II (Protein kinase fold) n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ57_9GAMM
putative homoserine kinase type II (protein kinase fold)
Putative homoserine kinase type II (Protein kinase fold) {ECO:0000313|EMBL:AGG89723.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1952_curated_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8254..9198
-----------------
DNA (945bp)
protein (315aa)
Putative permease n=1 Tax=Rhodanobacter denitrificans RepID=I4WY94_9GAMM
Putative permease {ECO:0000313|EMBL:EIM03091.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease
scnpilot_solids2_trim150_scaffold_1952_curated_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9280..9870
-----------------
DNA (591bp)
protein (197aa)
Response regulator receiver protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY95_9GAMM
response regulator containing a CheY-like receiver domain and a GGDEF domain
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1952_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9876..10268
-----------------
DNA (393bp)
protein (131aa)
Ribosome-associated heat shock protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY96_9GAMM
ribosome-associated heat shock protein implicated in recycling of 50S subunit
Heat shock protein 15 {ECO:0000256|PIRNR:PIRNR016821}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1952_curated_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10380..10991
-----------------
DNA (612bp)
protein (204aa)
Response regulator receiver n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W452_9GAMM
Response regulator receiver {ECO:0000313|EMBL:EIL94243.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
scnpilot_solids2_trim150_scaffold_1952_curated_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11004..13592)
-----------------
DNA (2589bp)
protein (863aa)
DNA mismatch repair protein MutS n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUF4_9GAMM
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA mismatch repair protein MutS
scnpilot_solids2_trim150_scaffold_1952_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13686..14195
-----------------
DNA (510bp)
protein (170aa)
Competence/damage-inducible protein CinA-like protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NQ15_9GAMM
competence/damage-inducible protein CinA-like protein
Competence/damage-inducible protein CinA-like protein {ECO:0000313|EMBL:AGG89716.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1952_curated_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14353..14946
-----------------
DNA (594bp)
protein (198aa)
Protein RecA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W447_9GAMM
protein RecA
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 15 items

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