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scnpilot_solids2_trim150_scaffold_2617_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_2617_curated_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..321
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W649_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94940.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_2617_curated_2
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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738..2897
DNA (2160bp) protein (720aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
protein containing C-terminal region/beta chain of methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VK78_9GAMM
scnpilot_solids2_trim150_scaffold_2617_curated_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2984..3271)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W647_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2617_curated_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3343..3951
DNA (609bp) protein (203aa)
RnfABCDGE type electron transport complex subunit B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRB2_9GAMM
RnfABCDGE type electron transport complex subunit B {ECO:0000313|EMBL:EIM02004.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
electron transport complex, RnfABCDGE type, B subunit
scnpilot_solids2_trim150_scaffold_2617_curated_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3948..4586
DNA (639bp) protein (213aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18 3.2.2.-)
Endonuclease III n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRB1_9GAMM
scnpilot_solids2_trim150_scaffold_2617_curated_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4633..5526)
DNA (894bp) protein (298aa)
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W477_9GAMM
23S RNA-specific pseudouridylate synthase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2617_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5604..6167
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWR7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89525.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2617_curated_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6378..6812
DNA (435bp) protein (145aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWR9_9GAMM
FKBP-type peptidyl-prolyl cis-trans isomerase
scnpilot_solids2_trim150_scaffold_2617_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6919..7776)
DNA (858bp) protein (286aa)
Serine/threonine protein kinase involved in cell cycle control n=1 Tax=Rhodanobacter denitrificans RepID=I4WWS0_9GAMM
serine/threonine protein kinase involved in cell cycle control
Serine/threonine protein kinase involved in cell cycle control {ECO:0000313|EMBL:AGG89528.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2617_curated_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7850..8833)
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD61_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97402.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
luciferase family oxidoreductase, group 1
scnpilot_solids2_trim150_scaffold_2617_curated_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8991..10043
DNA (1053bp) protein (351aa)
Putative signal transduction protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NHH6_9GAMM
putative signal transduction protein
Putative signal transduction protein {ECO:0000313|EMBL:AGG89532.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2617_curated_12
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10127..10228
DNA (102bp) protein (34aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWS3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2617_curated_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10238..10639)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A43C4A
lipoprotein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_2617_curated_14
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10676..11446)
DNA (771bp) protein (257aa)
LytTR family transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WY31_9GAMM
response regulator of the LytR/AlgR family
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_2617_curated_15
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11439..12686)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034580AA
Histidine kinase {ECO:0000313|EMBL:KGO98947.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
putative regulator of cell autolysis
scnpilot_solids2_trim150_scaffold_2617_curated_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12908..13204)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAG4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96455.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_2617_curated_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13763..14536)
DNA (774bp) protein (258aa)
Putative methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD67_9GAMM
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AGG89535.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2617_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14703..16142
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NPG4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89536.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_2617_curated_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16147..16572
DNA (426bp) protein (142aa)
Glutamate carboxypeptidase II n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD69_9GAMM
Glutamate carboxypeptidase II {ECO:0000313|EMBL:EIL97410.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative aminopeptidase
Displaying 19 items

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