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scnpilot_solids2_trim150_scaffold_1405_curated_7

Organism: solids_Rhodanobacter_1

partial RP 28 / 55 MC: 3 BSCG 30 / 51 MC: 4 ASCG 8 / 38 MC: 1
Location: comp(5695..6249)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK27_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 84.2
  • Coverage: 184.0
  • Bit_score: 314
  • Evalue 5.60e-83
RNA polymerase sigma factor {ECO:0000313|EMBL:EIL99818.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.2
  • Coverage: 184.0
  • Bit_score: 314
  • Evalue 7.90e-83
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 65.6
  • Coverage: 183.0
  • Bit_score: 237
  • Evalue 2.70e-60

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 555
ATGGATGCCCCGGTCGACCCCGATGCGATGCTGATGCTGGCCTACGCGCGCGGCGATCTTGCCGCGTTCGAGGCGCTGTACGCGAAGCATCGCGGCGTGCTGTATCGTTTCCTGCTGCGCAGCCTGCGCGATCCCCAGCGCACCGACGAGCTGTTCCAGGAAACCTGGAGCCGGGTGATCGCCGCCCGCGCGCGCTACCAGCCGCAAGCAAAGTTCAGTACCTGGCTGCTGCAGATCGCGCACAACCTTCTGGTCGATGCGCTGCGCCGCCAGCGCCCCACCGCCGACGGCGAGGAAGCCGAACTGGCGCTGTCCCGCGTCGCCATCCCCGAACACGAGCAACCCGAGCACGCCTGGTCCGATTTCGAGCGCCGCCGCCATCTGCAGCGCGCGATCGAGCAGTTGCCCGACGAGCAACGCACCGCCATCCTGTTGCGGCTGGAGCAGGAGCTGAGCCTGGAGGAGATCGCCGAAGTGACCGGCAGCGGCCGCGAGACCGTGAAGTCGCGCCTGCGCTATGCCATGACCCGCCTACGTGAAGCGCTGTCCGAATGA
PROTEIN sequence
Length: 185
MDAPVDPDAMLMLAYARGDLAAFEALYAKHRGVLYRFLLRSLRDPQRTDELFQETWSRVIAARARYQPQAKFSTWLLQIAHNLLVDALRRQRPTADGEEAELALSRVAIPEHEQPEHAWSDFERRRHLQRAIEQLPDEQRTAILLRLEQELSLEEIAEVTGSGRETVKSRLRYAMTRLREALSE*