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scnpilot_solids2_trim150_scaffold_1405_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1405_curated_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..154)
DNA (153bp) protein (51aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
catalase; K03781 catalase [EC:1.11.1.6]
Catalase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z6_9GAMM
scnpilot_solids2_trim150_scaffold_1405_curated_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

370..1422
DNA (1053bp) protein (351aa)
alcohol dehydrogenase; K13979 uncharacterized zinc-type alcohol dehydrogenase-like protein [EC:1.-.-.-]
Alcohol dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z7_9GAMM
Alcohol dehydrogenase {ECO:0000313|EMBL:EIL95238.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids2_trim150_scaffold_1405_curated_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1495..2049)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95239.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1405_curated_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2083..3855)
DNA (1773bp) protein (591aa)
ABC transporter permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W700_9GAMM
ABC transporter permease {ECO:0000313|EMBL:EIL95241.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC transporter, permease/ATP-binding protein
scnpilot_solids2_trim150_scaffold_1405_curated_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4215..4853)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W701_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95242.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1405_curated_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4808..5698)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W702_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95243.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1405_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5695..6249)
DNA (555bp) protein (185aa)
RNA polymerase sigma factor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK27_9GAMM
RNA polymerase sigma factor {ECO:0000313|EMBL:EIL99818.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_solids2_trim150_scaffold_1405_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6410..8236)
DNA (1827bp) protein (609aa)
von Willebrand factor type A n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK26_9GAMM
von Willebrand factor type A {ECO:0000313|EMBL:EIL99817.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
lipoprotein; K07114 uncharacterized protein
scnpilot_solids2_trim150_scaffold_1405_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8369..8842
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NI15_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89313.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1405_curated_10
Burkholderia sp. CCGE1003, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8910..9716
DNA (807bp) protein (269aa)
Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. (strain CCGE1003) RepID=E1TJZ0_BURSG
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADN60990.1}; TaxID=640512 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1003).;"
scnpilot_solids2_trim150_scaffold_1405_curated_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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9799..10392
DNA (594bp) protein (198aa)
GNAT family acetyltransferase n=1 Tax=Patulibacter americanus RepID=UPI0003B4A9F9
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AHG93659.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
sortase
scnpilot_solids2_trim150_scaffold_1405_curated_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10352..10849)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK21_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99812.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1405_curated_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11030..12472)
DNA (1443bp) protein (481aa)
Phospholipase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK20_9GAMM
Phospholipase {ECO:0000313|EMBL:EIL99811.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1405_curated_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12605..13360
DNA (756bp) protein (252aa)
Lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W115_9GAMM
Lipoprotein {ECO:0000313|EMBL:EIL93156.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1405_curated_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13439..14869)
DNA (1431bp) protein (477aa)
Aldehyde dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W711_9GAMM
Aldehyde dehydrogenase {ECO:0000313|EMBL:EIL95252.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NAD-dependent aldehyde dehydrogenase
scnpilot_solids2_trim150_scaffold_1405_curated_16
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15056..15607)
DNA (552bp) protein (184aa)
TetR-family transcriptional regulator n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P8H9_AROAE
TetR family transcriptional regulator
TetR-family transcriptional regulator {ECO:0000313|EMBL:CAI06380.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_solids2_trim150_scaffold_1405_curated_17
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15724..16935
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P8I0_AROAE
Glycosyl transferase {ECO:0000313|EMBL:KIF81055.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1405_curated_18
Colwellia psychrerythraea, Colwellia, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17472..17927
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Vibrio nigripulchritudo SOn1 RepID=U4JQ71_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:KGJ96636.1}; TaxID=28229 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Colwellia.;" source="Colwellia psychrerythraea (Vibrio psychroerythus).;"
scnpilot_solids2_trim150_scaffold_1405_curated_19
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17924..18844
DNA (921bp) protein (307aa)
histone deacetylase superfamily protein; K11418 histone deacetylase 11 [EC:3.5.1.98]
Acetoin utilization protein AcuC n=1 Tax=Pseudoalteromonas sp. BSi20495 RepID=G7G3Z1_9GAMM
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
scnpilot_solids2_trim150_scaffold_1405_curated_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18875..20236)
DNA (1362bp) protein (454aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Exodeoxyribonuclease VII large subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WEY6_9GAMM
scnpilot_solids2_trim150_scaffold_1405_curated_21
unknown

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comp(20315..20440)
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying 21 items

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