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scnpilot_solids2_trim150_scaffold_534_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_534_curated_1
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

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161..1354
DNA (1194bp) protein (398aa)
Putative uncharacterized protein id=1970436 bin=GWE2_Bacteroidetes_42_39 species=Echinicola vietnamensis genus=Echinicola taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_39 organism_group=Bacteroidetes organism_desc=Good +
SusC/RagA family TonB-linked outer membrane protein
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids2_trim150_scaffold_534_curated_2
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1375..2811
DNA (1437bp) protein (479aa)
Putative nutrient binding outer membrane protein n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7V6E9_9BACT
Putative nutrient binding outer membrane protein {ECO:0000313|EMBL:EPR65162.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
RagB/SusD domain-containing protein
scnpilot_solids2_trim150_scaffold_534_curated_3
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

2828..2917
DNA (90bp) protein (30aa)
Uncharacterized protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QLS0_SPILD
Uncharacterized protein {ECO:0000313|EMBL:ADB40360.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_534_curated_4
unknown

Not on your lists

3074..5614
DNA (2541bp) protein (847aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_534_curated_5
GWE2_Bacteroidetes_42_39_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5686..8667
DNA (2982bp) protein (994aa)
Glycoside hydrolase family 2 sugar binding protein id=4541366 bin=GWA2_Bacteroidetes_42_15 species=Cyclobacterium marinum genus=Cyclobacterium taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
glycoside hydrolase
Tax=GWE2_Bacteroidetes_42_39_curated
scnpilot_solids2_trim150_scaffold_534_curated_6
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8674..9933
DNA (1260bp) protein (420aa)
Hexuronate transporter n=1 Tax=Cyclobacterium qasimii M12-11B RepID=S7V5N2_9BACT
Hexuronate transporter {ECO:0000313|EMBL:EPR65166.1}; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
major facilitator superfamily protein; K08191 MFS transporter, ACS family, hexuronate transporter
scnpilot_solids2_trim150_scaffold_534_curated_7
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9965..11431
DNA (1467bp) protein (489aa)
L-arabinose isomerase {ECO:0000256|SAAS:SAAS00093763}; EC=5.3.1.4 {ECO:0000256|SAAS:SAAS00093763};; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
L-arabinose isomerase n=1 Tax=Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221) RepID=L0FUJ2_ECHVK
L-arabinose isomerase
scnpilot_solids2_trim150_scaffold_534_curated_8
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11548..12636
DNA (1089bp) protein (363aa)
sugar:proton symporter n=1 Tax=Pedobacter agri RepID=UPI000299D9BA
Sugar:proton symporter {ECO:0000313|EMBL:KIA92637.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
rhamnose-proton symporter; K02856 L-rhamnose-H+ transport protein
scnpilot_solids2_trim150_scaffold_534_curated_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12664..14784
DNA (2121bp) protein (707aa)
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase {ECO:0000313|EMBL:AEV99958.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEV99958.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPW4_NIAKG
rhamnulose-1-phosphate aldolase/alcohol dehydrogenase
scnpilot_solids2_trim150_scaffold_534_curated_10
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

15059..15373
DNA (315bp) protein (105aa)
L-rhamnose mutarotase; K03534 L-rhamnose mutarotase [EC:5.1.3.-]
L-rhamnose mutarotase {ECO:0000256|SAAS:SAAS00048862}; EC=5.1.3.32 {ECO:0000256|SAAS:SAAS00169483};; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
L-rhamnose mutarotase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPW3_NIAKG
scnpilot_solids2_trim150_scaffold_534_curated_11
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

15389..16663
DNA (1275bp) protein (425aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EC72_RUNSL
xylose isomerase domain-containing protein
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AEI47603.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids2_trim150_scaffold_534_curated_12
unknown

Not on your lists

comp(16650..16853)
DNA (204bp) protein (68aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_534_curated_13
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17032..18420
DNA (1389bp) protein (463aa)
Carbohydrate kinase, FGGY n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EC73_RUNSL
carbohydrate kinase, FGGY
Carbohydrate kinase, FGGY {ECO:0000313|EMBL:AEI47604.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids2_trim150_scaffold_534_curated_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18576..19463
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T829_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97980.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_534_curated_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19460..19852
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBW7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99260.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_534_curated_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20045..20809
DNA (765bp) protein (255aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
Phospholipid/glycerol acyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TBW6_NIAKG
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:AEV99259.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_534_curated_17
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20912..22294)
DNA (1383bp) protein (461aa)
Oxidoreductase domain protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SCS6_PEDSD
Oxidoreductase {ECO:0000313|EMBL:KIC90594.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
oxidoreductase domain-containing protein
scnpilot_solids2_trim150_scaffold_534_curated_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22433..23269
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036A44A5
xylose isomerase domain-containing protein
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:AEV97004.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_534_curated_19
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(23276..23536)
DNA (261bp) protein (87aa)
Acyl-coA-binding protein ACBP n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PDZ3_CHIPD
Acyl-CoA-binding protein {ECO:0000313|EMBL:KIF33498.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
acyl-coA-binding protein ACBP
scnpilot_solids2_trim150_scaffold_534_curated_20
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23625..24623
DNA (999bp) protein (333aa)
Fatty acid hydroxylase n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GBU1_9BACT
Contig6, whole genome shotgun sequence {ECO:0000313|EMBL:KIO78816.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
fatty acid hydroxylase
scnpilot_solids2_trim150_scaffold_534_curated_21
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

25030..28596
DNA (3567bp) protein (1189aa)
Polysaccharide lyase family 8 {ECO:0000313|EMBL:EDY20870.1}; EC=4.2.2.20 {ECO:0000313|EMBL:EDY20870.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Polysaccharide lyase family 8 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX72_9BACT
polysaccharide lyase family 8
scnpilot_solids2_trim150_scaffold_534_curated_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28753..30546
DNA (1794bp) protein (598aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Elongation factor 4 n=1 Tax=Niabella soli DSM 19437 RepID=H1NJG7_9SPHI
GTP-binding protein lepA; K03596 GTP-binding protein LepA
scnpilot_solids2_trim150_scaffold_534_curated_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30662..31861)
DNA (1200bp) protein (400aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
phosphoglycerate kinase; K00927 phosphoglycerate kinase [EC:2.7.2.3]
phosphoglycerate kinase n=1 Tax=Niabella aurantiaca RepID=UPI00035FCEB6
scnpilot_solids2_trim150_scaffold_534_curated_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32068..33081)
DNA (1014bp) protein (338aa)
glyceraldehyde-3-phosphate dehydrogenase (NAD+); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Glyceraldehyde-3-phosphate dehydrogenase (NAD+) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TB39_NIAKG
scnpilot_solids2_trim150_scaffold_534_curated_25
Bacillus sp. B-jedd, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33584..33904)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002EDCE03
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=1476857 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. B-jedd.;"
SirA
scnpilot_solids2_trim150_scaffold_534_curated_26
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33945..34874)
DNA (930bp) protein (310aa)
Flavoprotein reductase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YCL8_9RHIZ
Putative oxidoreductase {ECO:0000313|EMBL:GAO42671.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Displaying 26 items

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