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scnpilot_solids2_trim150_scaffold_1125_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1125_curated_1
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(169..870)
DNA (702bp) protein (234aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIJ4_NIAKG
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEW02847.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1125_curated_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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1001..1696
DNA (696bp) protein (232aa)
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIJ3_NIAKG
HAD superfamily hydrolase; K07025 putative hydrolase of the HAD superfamily
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 {ECO:0000313|EMBL:AEW02846.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1125_curated_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1828..2496)
DNA (669bp) protein (223aa)
phosphatidylserine decarboxylase; K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|SAAS:SAAS00093350};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Phosphatidylserine decarboxylase related protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIJ2_NIAKG
scnpilot_solids2_trim150_scaffold_1125_curated_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(2558..3430)
DNA (873bp) protein (291aa)
phosphatidate cytidylyltransferase; K00981 phosphatidate cytidylyltransferase [EC:2.7.7.41]
Phosphatidate cytidylyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THJ7_NIAKG
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:AEW02843.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1125_curated_5
unknown

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comp(3427..3522)
DNA (96bp) protein (32aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_1125_curated_6
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(3545..4492)
DNA (948bp) protein (316aa)
Abortive infection protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NV65_9SPHI
Abortive infection protein; K07052
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_1125_curated_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4651..5673
DNA (1023bp) protein (341aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
tRNA-dihydrouridine synthase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THJ5_NIAKG
tRNA-U20-dihydrouridine synthase
scnpilot_solids2_trim150_scaffold_1125_curated_8
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5677..7050)
DNA (1374bp) protein (458aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003788883
scnpilot_solids2_trim150_scaffold_1125_curated_9
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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comp(7130..10087)
DNA (2958bp) protein (986aa)
Translation initiation factor IF-2 n=1 Tax=Niabella soli DSM 19437 RepID=H1NR38_9SPHI
translation initiation factor 2 (bIF-2); K02519 translation initiation factor IF-2
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids2_trim150_scaffold_1125_curated_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(10145..11392)
DNA (1248bp) protein (416aa)
NusA antitermination factor n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8W7_NIAKG
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
NusA antitermination factor; K02600 N utilization substance protein A
scnpilot_solids2_trim150_scaffold_1125_curated_11
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11452..11922)
DNA (471bp) protein (157aa)
Ribosome maturation factor RimP n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8W8_NIAKG
Ribosome maturation factor rimP; K09748 ribosome maturation factor RimP
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids2_trim150_scaffold_1125_curated_12
Nitratifractor salsuginis, Nitratifractor, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

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comp(12276..13343)
DNA (1068bp) protein (356aa)
nad-dependent epimerase/dehydratase (EC:5.1.3.12); K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6]
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ADV47241.1}; EC=5.1.3.12 {ECO:0000313|EMBL:ADV47241.1};; TaxID=749222 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Nitratifractor.;" source="Nitratifractor salsuginis (strain DSM 16511 / JCM 12458 / E9I37-1).;"
NAD-dependent epimerase/dehydratase n=1 Tax=Nitratifractor salsuginis (strain DSM 16511 / JCM 12458 / E9I37-1) RepID=E6X2V8_NITSE
scnpilot_solids2_trim150_scaffold_1125_curated_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(13490..14557)
DNA (1068bp) protein (356aa)
Peptide chain release factor 1 n=1 Tax=Niabella soli DSM 19437 RepID=H1NRH1_9SPHI
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptide chain release factor 1 (bRF-1); K02835 peptide chain release factor 1
scnpilot_solids2_trim150_scaffold_1125_curated_14
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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14727..15893
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035C9823
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ACU57939.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids2_trim150_scaffold_1125_curated_15
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(16039..18888)
DNA (2850bp) protein (950aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7]
DNA polymerase I n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCH4_NIAKG
DNA polymerase I {ECO:0000313|EMBL:KIC91017.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Displaying 15 items

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