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scnpilot_solids2_trim150_scaffold_402_curated

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_402_curated_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(215..2791)
DNA (2577bp) protein (859aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L552_FRAAD
Uncharacterized protein {ECO:0000313|EMBL:AHX12278.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_402_curated_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2827..5052)
DNA (2226bp) protein (742aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WIX9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97321.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_402_curated_3
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5159..5596)
DNA (438bp) protein (146aa)
Class II pilin PilE n=1 Tax=Rhodanobacter denitrificans RepID=I4WIX8_9GAMM
Fimbrial protein {ECO:0000313|EMBL:KJV30929.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
pilin; K02650 type IV pilus assembly protein PilA
scnpilot_solids2_trim150_scaffold_402_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6106..6540)
DNA (435bp) protein (145aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NBV0_9GAMM
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGG88084.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_402_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6867..7922
DNA (1056bp) protein (352aa)
dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=M4NE19_9GAMM
scnpilot_solids2_trim150_scaffold_402_curated_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8435..9310
DNA (876bp) protein (292aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VJL0_9GAMM
scnpilot_solids2_trim150_scaffold_402_curated_7
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9572..10147
DNA (576bp) protein (192aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Rhodanobacter denitrificans RepID=I4WSP6_9GAMM
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:KGI78488.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_solids2_trim150_scaffold_402_curated_8
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10152..11168
DNA (1017bp) protein (339aa)
rfbD; dTDP-4-dehydrorhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
dTDP-4-dehydrorhamnose reductase n=1 Tax=Xanthomonas oryzae RepID=UPI00030450A1
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:GAN45247.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_solids2_trim150_scaffold_402_curated_9
gamma proteobacterium BDW918, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11414..11983
DNA (570bp) protein (190aa)
N-terminal methylation site n=1 Tax=gamma proteobacterium BDW918 RepID=I2JHM3_9GAMM
N-terminal methylation site {ECO:0000313|EMBL:EIF42475.1}; TaxID=1168065 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium BDW918.;"
type IV fimbrial fimt-related pilin; K08084 type IV fimbrial biogenesis protein FimT
scnpilot_solids2_trim150_scaffold_402_curated_10
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11980..12561
DNA (582bp) protein (194aa)
Type IV pilus modification protein PilV n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L4L8_FRAAD
type IV pilus modification protein PilV; K02671 type IV pilus assembly protein PilV
Type IV pilus modification protein PilV {ECO:0000313|EMBL:AFC86573.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
scnpilot_solids2_trim150_scaffold_402_curated_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12558..13907
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L4L7_FRAAD
Uncharacterized protein {ECO:0000313|EMBL:AHX16110.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein; K02672 type IV pilus assembly protein PilW
scnpilot_solids2_trim150_scaffold_402_curated_12
unknown

Not on your lists

13917..14102
DNA (186bp) protein (62aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_402_curated_13
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14119..14790
DNA (672bp) protein (224aa)
Type IV pilus assembly protein PilX n=1 Tax=mine drainage metagenome RepID=T1BWK3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:AHX16111.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
Tfp pilus assembly protein PilX; K02673 type IV pilus assembly protein PilX
scnpilot_solids2_trim150_scaffold_402_curated_14

Not on your lists

14868..19067
DNA (4200bp) protein (1400aa)
Type 4 fimbrial biogenesis protein PilY1 n=1 Tax=mine drainage metagenome RepID=T0ZA38_9ZZZZ
Type 4 fimbrial biogenesis protein PilY1 {ECO:0000313|EMBL:EQD41918.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Tfp pilus assembly protein, tip-associated adhesin PilY1; K02674 type IV pilus assembly protein PilY1
scnpilot_solids2_trim150_scaffold_402_curated_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19089..19517
DNA (429bp) protein (143aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L4L4_FRAAD
Uncharacterized protein {ECO:0000313|EMBL:AHX12644.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
prepilin-type N-terminal cleavage/methylation domain-containing protein; K02655 type IV pilus assembly protein PilE
scnpilot_solids2_trim150_scaffold_402_curated_16
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19692..19928
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J2W4_ACIMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ79753.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
scnpilot_solids2_trim150_scaffold_402_curated_17
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20445..23195)
DNA (2751bp) protein (917aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
Aconitate hydratase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVA9_9GAMM
aconitate hydratase 1
scnpilot_solids2_trim150_scaffold_402_curated_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23519..25327
DNA (1809bp) protein (603aa)
Cl-channel voltage-gated family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W554_9GAMM
Cl-channel voltage-gated family protein {ECO:0000313|EMBL:EIL94595.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
eriC; EriC chloride channel protein
scnpilot_solids2_trim150_scaffold_402_curated_19
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26118..26738)
DNA (621bp) protein (207aa)
High frequency lysogenization protein HflD homolog n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNK8_9GAMM
High frequency lysogenization protein HflD homolog {ECO:0000256|HAMAP-Rule:MF_00695}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
uncharacterized protein involved in purine metabolism
scnpilot_solids2_trim150_scaffold_402_curated_20
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26735..27850)
DNA (1116bp) protein (372aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VNK9_9GAMM
scnpilot_solids2_trim150_scaffold_402_curated_21
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27847..28338)
DNA (492bp) protein (164aa)
7,8-dihydro-8-oxoguanine-triphosphatase n=1 Tax=Dyella ginsengisoli RepID=UPI00034D8C01
7,8-dihydro-8-oxoguanine-triphosphatase {ECO:0000313|EMBL:KGI78345.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
ADP-ribose pyrophosphatase
scnpilot_solids2_trim150_scaffold_402_curated_22
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28447..28779
DNA (333bp) protein (111aa)
ATP-dependent Clp protease adapter protein ClpS id=2473901 bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
ATP-dependent Clp protease adaptor protein ClpS; K06891 ATP-dependent Clp protease adaptor protein ClpS
Tax=GWF1_Xanthomonadales_69_6_curated
scnpilot_solids2_trim150_scaffold_402_curated_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28821..31097
DNA (2277bp) protein (759aa)
ATP-dependent Clp protease ATP-binding subunit ClpA (EC:3.4.21.92)
ATP-dependent Clp protease subunit n=1 Tax=Rhodanobacter sp. 115 RepID=I4WEV9_9GAMM
ATP-dependent Clp protease subunit {ECO:0000313|EMBL:EIL98000.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids2_trim150_scaffold_402_curated_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31133..33373)
DNA (2241bp) protein (747aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSI6_9GAMM
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein {ECO:0000313|EMBL:EIM02428.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
scnpilot_solids2_trim150_scaffold_402_curated_25
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33370..33963)
DNA (594bp) protein (198aa)
2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=mine drainage metagenome RepID=T0ZEL4_9ZZZZ
(2Fe-2S)-binding protein {ECO:0000313|EMBL:KJV29668.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein
scnpilot_solids2_trim150_scaffold_402_curated_26
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34335..37055
DNA (2721bp) protein (907aa)
Aspartate kinase {ECO:0000313|EMBL:KGI77280.1}; EC=2.7.2.4 {ECO:0000313|EMBL:KGI77280.1};; EC=4.1.1.20 {ECO:0000313|EMBL:KGI77280.1};; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
aspartate kinase (EC:4.1.1.20 2.7.2.4)
Bifunctional aspartate kinase/diaminopimelate decarboxylase protein id=2595783 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas spadix genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
scnpilot_solids2_trim150_scaffold_402_curated_27
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37052..38473
DNA (1422bp) protein (474aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002FDBB80
Uncharacterized protein {ECO:0000313|EMBL:AIF47107.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_402_curated_28
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38454..39824
DNA (1371bp) protein (457aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031D1B77
scnpilot_solids2_trim150_scaffold_402_curated_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40075..41082)
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2U895_XANAP
Uncharacterized protein {ECO:0000313|EMBL:GAN45631.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_402_curated_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41099..43627)
DNA (2529bp) protein (843aa)
Outer membrane cobalamin receptor protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWB0_9GAMM
outer membrane cobalamin receptor protein
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:AGG90558.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying 30 items

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