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scnpilot_solids2_trim150_scaffold_446_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_446_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..421
DNA (420bp) protein (140aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Rhodanobacter denitrificans RepID=M4NI35_9GAMM
ribosome small subunit-dependent GTPase A
scnpilot_solids2_trim150_scaffold_446_curated_2
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

432..1691
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WBU3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45455.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_446_curated_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1727..3175
DNA (1449bp) protein (483aa)
2-aminomuconic semialdehyde dehydrogenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WKV5_9GAMM
2-aminomuconic semialdehyde dehydrogenase {ECO:0000313|EMBL:EIM00097.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
NAD-dependent aldehyde dehydrogenase
scnpilot_solids2_trim150_scaffold_446_curated_4
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3329..3982
DNA (654bp) protein (218aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
carbonate dehydratase; K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UV66_PSEUP
scnpilot_solids2_trim150_scaffold_446_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4054..5508
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NPG4_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89536.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_446_curated_6
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5505..5933
DNA (429bp) protein (143aa)
Endoribonuclease L-PSP n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WQA4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFN50906.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
putative translation initiation inhibitor, yjgF family
scnpilot_solids2_trim150_scaffold_446_curated_7
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6085..6384
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00037FF4CD
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:ADP81067.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
scnpilot_solids2_trim150_scaffold_446_curated_8
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6381..6854
DNA (474bp) protein (158aa)
Uncharacterized protein n=3 Tax=Amycolatopsis mediterranei RepID=G0G9F7_AMYMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK41218.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
scnpilot_solids2_trim150_scaffold_446_curated_9
unknown

Not on your lists

6905..7336
DNA (432bp) protein (144aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_446_curated_10
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7321..8124)
DNA (804bp) protein (268aa)
N-formylglutamate amidohydrolase; K01458 N-formylglutamate deformylase [EC:3.5.1.68]
N-formylglutamate amidohydrolase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WV44_PSEUU
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:KGI77626.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
scnpilot_solids2_trim150_scaffold_446_curated_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8219..10993
DNA (2775bp) protein (925aa)
Putative Beta-(1-3)-glucosyl transferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVY3_9GAMM
Putative Beta-(1-3)-glucosyl transferase {ECO:0000313|EMBL:EIL91374.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
exo-beta-1,3-glucanase
scnpilot_solids2_trim150_scaffold_446_curated_12
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11448..13214
DNA (1767bp) protein (589aa)
Surface antigen (D15) n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VVY4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45993.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
outer membrane protein
scnpilot_solids2_trim150_scaffold_446_curated_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13356..17090
DNA (3735bp) protein (1245aa)
Pathogenicity protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WC79_9GAMM
Pathogenicity protein {ECO:0000313|EMBL:EIL97070.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_446_curated_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17148..17990
DNA (843bp) protein (281aa)
Putative metal-dependent membrane protease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJE2_9GAMM
Putative metal-dependent membrane protease {ECO:0000313|EMBL:EIL87333.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative metal-dependent membrane protease
scnpilot_solids2_trim150_scaffold_446_curated_15
RBG_16_Ignavibacteria_36_9_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

18325..19050
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00036B456B
hypothetical protein
Tax=RBG_16_Ignavibacteria_36_9_curated
scnpilot_solids2_trim150_scaffold_446_curated_16
unknown

Not on your lists

comp(19574..19702)
DNA (129bp) protein (43aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
scnpilot_solids2_trim150_scaffold_446_curated_17
Gammaproteobacteria bacterium MFB021, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19726..20016)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Kushneria aurantia RepID=UPI00036857E6
XRE family transcriptional regulator {ECO:0000313|EMBL:KFF47923.1}; TaxID=1492922 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MFB021.;"
XRE family transcriptional regulator; K07726 putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_446_curated_18
DS1215_Halomonas_54_146, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20013..20348)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Halomonas sp. GFAJ-1 RepID=H0J3M8_9GAMM
hypothetical protein
Tax=DS1215_Halomonas_54_146
scnpilot_solids2_trim150_scaffold_446_curated_19
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20407..22200)
DNA (1794bp) protein (598aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase {ECO:0000313|EMBL:ACX94892.1}; EC=2.3.2.2 {ECO:0000313|EMBL:ACX94892.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Gamma-glutamyltransferase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KVW5_HALNC
scnpilot_solids2_trim150_scaffold_446_curated_20
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22260..23447)
DNA (1188bp) protein (396aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleia
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
phosphoribosylaminoimidazole carboxylase n=1 Tax=Dyella japonica RepID=UPI0002FCCB83
scnpilot_solids2_trim150_scaffold_446_curated_21
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23548..24108)
DNA (561bp) protein (187aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Dyella ginsengisoli RepID=UPI000348A19F
5-(carboxyamino)imidazole ribonucleotide mutase
scnpilot_solids2_trim150_scaffold_446_curated_22
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24144..24410
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000360087E
Uncharacterized protein {ECO:0000313|EMBL:AIF47285.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_446_curated_23
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24534..26873
DNA (2340bp) protein (780aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7S8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45223.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
Protein of unknown function (DUF1631)
scnpilot_solids2_trim150_scaffold_446_curated_24
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26870..27730
DNA (861bp) protein (287aa)
nicotinate-nucleotide pyrophosphorylase (carboxylating) (EC:2.4.2.19)
nicotinate-nucleotide pyrophosphorylase n=1 Tax=Dyella japonica RepID=UPI0002D334C3
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:GAN45224.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
scnpilot_solids2_trim150_scaffold_446_curated_25
unknown

Not on your lists

27863..28237
DNA (375bp) protein (125aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_446_curated_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28417..32457)
DNA (4041bp) protein (1347aa)
ATP-dependent helicase HrpA n=1 Tax=Rhodanobacter denitrificans RepID=M4NJG2_9GAMM
ATP-dependent helicase HrpA
ATP-dependent helicase HrpA {ECO:0000313|EMBL:AGG90242.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_446_curated_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32548..34668
DNA (2121bp) protein (707aa)
Putative metalloendopeptidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WC77_9GAMM
Putative metalloendopeptidase {ECO:0000313|EMBL:EIL97068.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative metalloendopeptidase
scnpilot_solids2_trim150_scaffold_446_curated_28
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34920..35516
DNA (597bp) protein (199aa)
Putative outer membrane protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWB4_9GAMM
Membrane protein {ECO:0000313|EMBL:KGI78438.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
putative outer membrane protein
scnpilot_solids2_trim150_scaffold_446_curated_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35652..36155
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4N3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94424.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_446_curated_30
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(36210..36974)
DNA (765bp) protein (255aa)
two-component system response regulator protein; K02477 two-component system, LytT family, response regulator
lytT; sensory transduction protein lytT; K02477 two-component system, LytT family, response regulator id=24658805 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Sensory transduction protein lytT {ECO:0000313|EMBL:CBH25993.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain M8).;"
Displaying items 1-30 of 33 in total

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