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scnpilot_solids2_trim150_scaffold_56_curated

Search features with annotation key words

Displaying items 241-270 of 315 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_56_curated_241
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(279466..281550)
DNA (2085bp) protein (695aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030A4BA1
Uncharacterized protein {ECO:0000313|EMBL:AIF47511.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_56_curated_242
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(281647..282777)
DNA (1131bp) protein (377aa)
pyridoxal-5'-phosphate-dependent enzyme, beta subunit; K01738 cysteine synthase A [EC:2.5.1.47]
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VK00_9GAMM
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit {ECO:0000313|EMBL:EIL87541.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids2_trim150_scaffold_56_curated_243
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

282801..283457
DNA (657bp) protein (219aa)
histidine kinase n=1 Tax=Dyella japonica RepID=UPI00030665D0
Histidine kinase {ECO:0000313|EMBL:AIF47870.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
two component LuxR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_56_curated_244
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(283536..286550)
DNA (3015bp) protein (1005aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribonuclease E n=1 Tax=Rhodanobacter denitrificans RepID=I4WXG6_9GAMM
ribonuclease, Rne/Rng family
scnpilot_solids2_trim150_scaffold_56_curated_245
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

286889..287833
DNA (945bp) protein (315aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY9_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_56_curated_246
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

287945..289291
DNA (1347bp) protein (449aa)
Nucleotide sugar dehydrogenase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJW3_9GAMM
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:EIL87504.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
nucleotide sugar dehydrogenase
scnpilot_solids2_trim150_scaffold_56_curated_247
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

289298..289513
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPK8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01400.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_56_curated_248
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

289516..290049
DNA (534bp) protein (178aa)
Nucleoprotein/polynucleotide-associated enzyme n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPK9_9GAMM
Nucleoprotein/polynucleotide-associated enzyme {ECO:0000313|EMBL:EIM01401.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_56_curated_249
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(290119..291309)
DNA (1191bp) protein (397aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026A5_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ83164.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
scnpilot_solids2_trim150_scaffold_56_curated_250
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

291636..292505
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VY63_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92154.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_56_curated_251
unknown

Not on your lists

comp(292583..293089)
DNA (507bp) protein (169aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_56_curated_252
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(293131..295041)
DNA (1911bp) protein (637aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00037EACA4
Serine protease {ECO:0000313|EMBL:KGO98333.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
scnpilot_solids2_trim150_scaffold_56_curated_253
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

295190..297001
DNA (1812bp) protein (604aa)
Transcriptional regulator domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH96_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:KGQ20597.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_56_curated_254
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

297024..297461
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CLS3_MYXFH
Uncharacterized protein {ECO:0000313|EMBL:KFE70350.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_56_curated_255
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(297488..299575)
DNA (2088bp) protein (696aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35 4.2.1.17)
Putative enoyl-CoA hydratasee n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPL0_9GAMM
Putative enoyl-CoA hydratasee {ECO:0000313|EMBL:EIM01402.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids2_trim150_scaffold_56_curated_256
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

299761..302058
DNA (2298bp) protein (766aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031D4275
Diguanylate cyclase {ECO:0000313|EMBL:KJV33230.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
diguanylate cyclase (GGDEF) domain-containing protein
scnpilot_solids2_trim150_scaffold_56_curated_257
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

302246..302833
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000376D47E
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:EIL95143.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA polymerase, sigma-24 subunit, RpoE
scnpilot_solids2_trim150_scaffold_56_curated_258
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

302879..303544
DNA (666bp) protein (222aa)
Negative regulator of sigma E activity n=1 Tax=Rhodanobacter denitrificans RepID=I4WR81_9GAMM
negative regulator of sigma E activity
Negative regulator of sigma E activity {ECO:0000313|EMBL:AGG89347.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_56_curated_259

Not on your lists

303714..305153
DNA (1440bp) protein (480aa)
Protease Do n=4 Tax=mine drainage metagenome RepID=T0Y1C4_9ZZZZ
Protease Do {ECO:0000313|EMBL:EQD28881.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
periplasmic serine protease, Do/DeqQ family
scnpilot_solids2_trim150_scaffold_56_curated_260
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

305505..306374
DNA (870bp) protein (290aa)
Beta-lactamase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1M7_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EIL93368.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Zn-dependent hydrolase, glyoxylase
scnpilot_solids2_trim150_scaffold_56_curated_261
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

306384..307418
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYF7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJV36269.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Protein of unknown function (DUF1625)
scnpilot_solids2_trim150_scaffold_56_curated_262
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

307521..308420
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EB2491
Beta-lactamase {ECO:0000313|EMBL:AIF49264.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
Zn-dependent hydrolase, glyoxylase
scnpilot_solids2_trim150_scaffold_56_curated_263
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(308422..308985)
DNA (564bp) protein (188aa)
NTP pyrophosphohydrolase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W1M5_9GAMM
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EIL93366.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
NTP pyrophosphohydrolase
scnpilot_solids2_trim150_scaffold_56_curated_264
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(308982..309911)
DNA (930bp) protein (310aa)
exodeoxyribonuclease IX n=1 Tax=Dyella japonica RepID=UPI0003126DB4
Exodeoxyribonuclease IX {ECO:0000313|EMBL:AIF49155.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
exonuclease
scnpilot_solids2_trim150_scaffold_56_curated_265
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(309908..310501)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037A5D1B
Nitroreductase {ECO:0000313|EMBL:AHX14324.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_56_curated_266
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

310572..311675
DNA (1104bp) protein (368aa)
NAD(P) transhydrogenase subunit alpha n=1 Tax=Dyella japonica RepID=UPI0002DF6BC6
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:AIF49152.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
NAD/NADP transhydrogenase alpha subunit
scnpilot_solids2_trim150_scaffold_56_curated_267
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

311833..312834
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037A7571
Uncharacterized protein {ECO:0000313|EMBL:KJV26463.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
scnpilot_solids2_trim150_scaffold_56_curated_268
Fischerella sp. JSC-11, Fischerella, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

312850..318180
DNA (5331bp) protein (1777aa)
6-deoxyerythronolide-B synthase {ECO:0000313|EMBL:EHC08349.1}; EC=2.3.1.94 {ECO:0000313|EMBL:EHC08349.1};; TaxID=741277 species="Bacteria; Cyanobacteria; Stigonematales; Fischerella.;" source="Fischerella sp. JSC-11.;"
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037BAFF3
Beta-ketoacyl synthase
scnpilot_solids2_trim150_scaffold_56_curated_269
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(318177..318887)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000374CEF5
Uncharacterized protein {ECO:0000313|EMBL:KJV26462.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
scnpilot_solids2_trim150_scaffold_56_curated_270
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(318919..319437)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037224FD
Uncharacterized protein {ECO:0000313|EMBL:KJV26461.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Displaying items 241-270 of 315 in total

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