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scnpilot_solids2_trim150_scaffold_12_curated

Search features with annotation key words

Displaying items 1-30 of 375 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_12_curated_1
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..3028)
DNA (3027bp) protein (1009aa)
hypothetical protein, partial n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00036886F9
Uncharacterized protein {ECO:0000313|EMBL:KJV35454.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
YadA domain-containing protein
scnpilot_solids2_trim150_scaffold_12_curated_2
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3379..4413)
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003782DDE
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ACZ90841.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
scnpilot_solids2_trim150_scaffold_12_curated_3
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4760..5062)
DNA (303bp) protein (101aa)
anti-anti-sigma factor n=1 Tax=Dyella ginsengisoli RepID=UPI000347967D
Anti-anti-sigma factor {ECO:0000313|EMBL:KJV27213.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
scnpilot_solids2_trim150_scaffold_12_curated_4
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5076..6254)
DNA (1179bp) protein (393aa)
methyl-accepting chemotaxis protein n=1 Tax=Dyella japonica RepID=UPI0002FCB195
Chemotaxis protein {ECO:0000313|EMBL:AIF49162.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
methyl-accepting chemotaxis protein
scnpilot_solids2_trim150_scaffold_12_curated_5
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6266..7378)
DNA (1113bp) protein (371aa)
Chemotaxis response regulator protein-glutamate methylesterase {ECO:0000256|HAMAP-Rule:MF_00099}; EC=3.1.1.61 {ECO:0000256|HAMAP-Rule:MF_00099};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
chemotaxis protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037CA119
chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
scnpilot_solids2_trim150_scaffold_12_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7387..8040)
DNA (654bp) protein (218aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBL5_9GAMM
chemotaxis protein
scnpilot_solids2_trim150_scaffold_12_curated_7
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8045..8902)
DNA (858bp) protein (286aa)
Chemotaxis protein methyltransferase {ECO:0000256|PIRNR:PIRNR000410}; EC=2.1.1.80 {ECO:0000256|PIRNR:PIRNR000410};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002EBEA73
methylase of chemotaxis methyl-accepting protein
scnpilot_solids2_trim150_scaffold_12_curated_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8906..10672)
DNA (1767bp) protein (589aa)
Methyl-accepting chemotaxis protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYR6_9GAMM
methyl-accepting chemotaxis protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_12_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10691..11197)
DNA (507bp) protein (169aa)
Chemotaxis signal transduction protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NR43_9GAMM
chemotaxis signal transduction protein
Chemotaxis signal transduction protein {ECO:0000313|EMBL:AGG90041.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_12_curated_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11285..13252)
DNA (1968bp) protein (656aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
CheA signal transduction histidine kinase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS0_9GAMM
chemotaxis protein histidine kinase-like protein
scnpilot_solids2_trim150_scaffold_12_curated_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13260..13622)
DNA (363bp) protein (121aa)
Fis family transcriptional regulator n=1 Tax=Dyella ginsengisoli RepID=UPI000348FA4A
Fis family transcriptional regulator {ECO:0000313|EMBL:AHX14342.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; K03413 two-component system, chemotaxis family, response regulator CheY
scnpilot_solids2_trim150_scaffold_12_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13643..13966)
DNA (324bp) protein (108aa)
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) n=1 Tax=Rhodanobacter denitrificans RepID=M4NGI3_9GAMM
anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) {ECO:0000313|EMBL:AGG90045.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_12_curated_13
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14213..17503
DNA (3291bp) protein (1097aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00037444C2
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ACT51966.1}; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source="Methylovorus glucosetrophus (strain SIP3-4).;"
scnpilot_solids2_trim150_scaffold_12_curated_14
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17609..18919
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBK7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJV29721.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
Flagellar hook-length control protein FliK
scnpilot_solids2_trim150_scaffold_12_curated_15
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18916..19179
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYS4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJV29665.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_12_curated_16
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19392..19757)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002FED5ED
Uncharacterized protein {ECO:0000313|EMBL:AIF49159.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_12_curated_17
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19966..21228)
DNA (1263bp) protein (421aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E51D4D
Uncharacterized protein {ECO:0000313|EMBL:KJV36271.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
putative signal transduction protein containing EAL and modified HD-GYP domains
scnpilot_solids2_trim150_scaffold_12_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21249..21692)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000347AA97
flagellar biosynthesis/type III secretory pathway chaperone
Flagellar biosynthesis/type III secretory pathway chaperone {ECO:0000313|EMBL:AGG90095.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_12_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21694..22002)
DNA (309bp) protein (103aa)
Anti-sigma-28 factor FlgM n=1 Tax=Rhodanobacter denitrificans RepID=I4WQQ3_9GAMM
flagellar biosynthesis anti-sigma factor FlgM
Flagellar biosynthesis anti-sigma factor FlgM {ECO:0000313|EMBL:AGG90094.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_12_curated_20
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22107..22799)
DNA (693bp) protein (231aa)
Flagellar basal body P-ring biosynthesis protein FlgA n=1 Tax=Rhodanobacter denitrificans RepID=I4WQQ2_9GAMM
Flagella basal body P-ring formation protein FlgA {ECO:0000256|RuleBase:RU362063}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
flagella basal body P-ring formation protein FlgA
scnpilot_solids2_trim150_scaffold_12_curated_21
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22796..24103)
DNA (1308bp) protein (436aa)
Methyl-accepting chemotaxis protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYF2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJV36273.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
methyl-accepting chemotaxis protein
scnpilot_solids2_trim150_scaffold_12_curated_22
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24282..25211
DNA (930bp) protein (310aa)
Chemotaxis signal transduction protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NRA2_9GAMM
Chemotaxis protein {ECO:0000313|EMBL:KJV36274.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
chemotaxis signal transduction protein
scnpilot_solids2_trim150_scaffold_12_curated_23
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25377..25793
DNA (417bp) protein (139aa)
Flagellar basal body rod protein FlgB n=1 Tax=Rhodanobacter denitrificans RepID=I4WQP9_9GAMM
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
flagellar basal-body rod protein FlgB
scnpilot_solids2_trim150_scaffold_12_curated_24
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25793..26224
DNA (432bp) protein (144aa)
flagellar basal body rod protein FlgC n=1 Tax=Dyella japonica RepID=UPI0002FBC5E8
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
flagellar basal-body rod protein FlgC
scnpilot_solids2_trim150_scaffold_12_curated_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26230..26880
DNA (651bp) protein (217aa)
Flagellar hook capping protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NK87_9GAMM
flagellar hook capping protein
Flagellar hook capping protein {ECO:0000313|EMBL:AGG90088.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_12_curated_26
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27136..28356
DNA (1221bp) protein (407aa)
Flagellar hook protein FlgE n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYE7_9GAMM
Flagellar hook protein FlgE {ECO:0000313|EMBL:GAN45489.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
flagellar hook-basal body protein
scnpilot_solids2_trim150_scaffold_12_curated_27
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28383..29123
DNA (741bp) protein (247aa)
Flagellar basal-body rod protein FlgF n=2 Tax=Rhodanobacter denitrificans RepID=M4NR97_9GAMM
Flagellar basal body rod protein FlgF {ECO:0000313|EMBL:GAN45488.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
flagellar basal-body rod protein FlgF
scnpilot_solids2_trim150_scaffold_12_curated_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29189..29974
DNA (786bp) protein (262aa)
Flagellar basal-body rod protein FlgG n=1 Tax=Rhodanobacter denitrificans RepID=M4NGL5_9GAMM
flagellar basal-body rod protein FlgG
Flagellar basal-body rod protein FlgG {ECO:0000313|EMBL:AGG90085.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_12_curated_29
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30150..30800
DNA (651bp) protein (217aa)
Flagellar L-ring protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NGR4_9GAMM
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
flagellar basal body L-ring protein
scnpilot_solids2_trim150_scaffold_12_curated_30
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30800..31978
DNA (1179bp) protein (393aa)
Flagellar P-ring protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VYE3_9GAMM
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
flagellar basal-body P-ring protein
Displaying items 1-30 of 375 in total

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