ggKbase home page

scnpilot_solids2_trim150_scaffold_392_curated_1

Organism: solids_Xanthomonadales_1

near complete RP 46 / 55 BSCG 45 / 51 ASCG 11 / 38
Location: comp(3..1580)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.9
  • Coverage: 531.0
  • Bit_score: 715
  • Evalue 7.40e-203
Transcription-repair-coupling factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WL90_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 68.9
  • Coverage: 531.0
  • Bit_score: 717
  • Evalue 8.20e-204
transcription-repair coupling factor Mfd similarity KEGG
DB: KEGG
  • Identity: 68.9
  • Coverage: 531.0
  • Bit_score: 715
  • Evalue 1.70e-203

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter denitrificans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1578
ATGCCCGAAACCGACATCCCGATTCCCGCGTTGCCGCGCAGTCCCGGCCAGCAACGCGACTGGCGCGAACCCGCGGGGTCGTCGCTGGCGCTGCTGTTGTGCGAAGCGGCGCGCCAGCGCGATGGCGTGATCGTCGCGGTCACCGCCGACAGCCGTGCGGCGCGCACGCTGGAAGACGAACTGGGCGTGTTCGCCGACGGCTTGCCGGTCCTGCACTTTCCGGATTGGGAAACCCTGCCCTACGATTTGTTCGCGCCGCATCCGCAACTGGTGTCGCAACGCATCGATACCTTGTACCGCCTGCCCGCCACCCGCAAGGGGGTGCTGGTGGTGCCGGTCGCCACGTTGATGCAACGCCTGGCGCCGCGCTCGCACATCGCGGGCAGCGGGCTGGCCGTCGCGCGCGGCCAGCAGCTCGACCTGGCGGACGAGCAGCGCCGCCTCGAAACCTGCGGCTACCGGCATGTTCCGCAGGTCGGCGAACACGGCGAGTTCGCCGTGCGCGGCGCGTTGCTCGACGTCTTCCCGATGGGTGCGTCCGAACCCTACCGCATCGAGCTGTTCGACGACGCGATCGAATCCATCCGCGCCTTCGATCCGGAAACCCAGCGTTCGCTGCACCAGGTCGATGCGGTGAAACTGCTGCCCGCACGCGAATTCCCGCTCACCGACGAAGCCATGCGCGCGTTCCGCGATCGGTTGCGCGAGCGCTTTCCGATCGACGTGCGGCGCTGCCCGCTCTACCAGGACATGAAGCAGGGCGTGACCCCGAGCGGCATCGAGTATTACCTGCCGTTGTTTTTCGACGCCACCGAGAGCCTGTTCGACTATCTCGGCGACGACGCGCTGTTCGTGCTCGGGCGCGGTGCGCTCGAAGCCGCGGAACCCTTCTGGAAACAAACCGAAGCCCGTTACGACCAGCGCGCACACGACATCGAACGGCCGGTGCTGCCGCCGATGGAGTTGTACCTGCCGCCGCAATCATTGCGCGAACGCCTGAACAACGTGCTGCGCATCGACATCGTCGCGCCCGACGATCCCCGCGCCGTGGATACCGGCACCCAGGCGGCGCCCGACTTTTCGGCGGGCGGCCCCCAGGCCGGCGGTTCTGCCGCGCGCCTGCGCGGCTGGCTGGAATCGCATCCCGGCACGCGCGTGCTGATCGCCGCCGATTCACCCGGCCGCCGCGAGGCTTTGCTGGAACAATTGAGTGCGGTCGAGATGCAGCCGCAAATCGTCGACGGCTGGCCGGCGTTCCTCGGCAAAGGGGGACCGCTGTCCATCACCAGCGCACCGCTGGAGCGCGGATTCACCCTGACGCAACCGCCCATCGCGGTCTTCACCGAGCGCGAACTCGCGGGTGAACGCGCACGCAGCGAACGCCAGCGCCGCCGCGTCGCCGAGCGCGATCCCGAAGCCATCCTGCGCGATCTTTCCGAACTCGAGATCGGCGCGCCGATCGTGCACGTCGACCACGGCGTCGGCCGTTACCTGGGCCTGGTCGCGCTGGATGTCGGCGGCATGCCCGGCGAATTCCTCGCCATCGAATACGCACGCGGCGACAAGCTGTACGTGCCG
PROTEIN sequence
Length: 526
MPETDIPIPALPRSPGQQRDWREPAGSSLALLLCEAARQRDGVIVAVTADSRAARTLEDELGVFADGLPVLHFPDWETLPYDLFAPHPQLVSQRIDTLYRLPATRKGVLVVPVATLMQRLAPRSHIAGSGLAVARGQQLDLADEQRRLETCGYRHVPQVGEHGEFAVRGALLDVFPMGASEPYRIELFDDAIESIRAFDPETQRSLHQVDAVKLLPAREFPLTDEAMRAFRDRLRERFPIDVRRCPLYQDMKQGVTPSGIEYYLPLFFDATESLFDYLGDDALFVLGRGALEAAEPFWKQTEARYDQRAHDIERPVLPPMELYLPPQSLRERLNNVLRIDIVAPDDPRAVDTGTQAAPDFSAGGPQAGGSAARLRGWLESHPGTRVLIAADSPGRREALLEQLSAVEMQPQIVDGWPAFLGKGGPLSITSAPLERGFTLTQPPIAVFTERELAGERARSERQRRRVAERDPEAILRDLSELEIGAPIVHVDHGVGRYLGLVALDVGGMPGEFLAIEYARGDKLYVP