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scnpilot_solids2_trim150_scaffold_392_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_392_curated_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1580)
DNA (1578bp) protein (526aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Transcription-repair-coupling factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WL90_9GAMM
transcription-repair coupling factor Mfd
scnpilot_solids2_trim150_scaffold_392_curated_2
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1676..2209)
DNA (534bp) protein (178aa)
Sortase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WM93_9GAMM
GCN5 family acetyltransferase {ECO:0000313|EMBL:KGI77862.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
sortase-like acyltransferase
scnpilot_solids2_trim150_scaffold_392_curated_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2270..2785)
DNA (516bp) protein (172aa)
Starvation-inducible outer membrane lipoprotein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VVL6_9GAMM
Starvation-inducible outer membrane lipoprotein {ECO:0000313|EMBL:EIL91257.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
starvation-inducible outer membrane lipoprotein
scnpilot_solids2_trim150_scaffold_392_curated_4

Not on your lists

comp(2861..3703)
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003717A88
Protein containing DUF519 {ECO:0000313|EMBL:EQD55967.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
protein involved in catabolism of external DNA
scnpilot_solids2_trim150_scaffold_392_curated_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3842..5635
DNA (1794bp) protein (598aa)
Copper-resistance protein, CopA family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRW6_9GAMM
Copper-resistance protein, CopA family protein {ECO:0000313|EMBL:EIL89957.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
copper-resistance protein, CopA family
scnpilot_solids2_trim150_scaffold_392_curated_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5632..6456
DNA (825bp) protein (275aa)
Uncharacterized protein involved in copper resistance n=1 Tax=Rhodanobacter denitrificans RepID=M4NGR0_9GAMM
uncharacterized protein involved in copper resistance
Uncharacterized protein involved in copper resistance {ECO:0000313|EMBL:AGG88843.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_392_curated_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6552..6710
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NGS8_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88858.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_392_curated_8
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6725..7471)
DNA (747bp) protein (249aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00036D8166
Peptide methionine sulfoxide reductase MsrA
scnpilot_solids2_trim150_scaffold_392_curated_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7667..9970)
DNA (2304bp) protein (768aa)
Nitric-oxide reductase subunit B n=1 Tax=Rhodanobacter sp. 115 RepID=I4WBG7_9GAMM
Nitric-oxide reductase subunit B {ECO:0000313|EMBL:EIL96808.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
nitric oxide reductase large subunit
scnpilot_solids2_trim150_scaffold_392_curated_10
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10040..11206)
DNA (1167bp) protein (389aa)
NnrS family protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DII2_9GAMM
Short-chain dehydrogenase {ECO:0000313|EMBL:AHE98232.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
NnrS protein superfamily; K07234 uncharacterized protein involved in response to NO
scnpilot_solids2_trim150_scaffold_392_curated_11
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11360..11779
DNA (420bp) protein (140aa)
DGPFAETKE family protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HE85_ANADF
DGPFAETKE family protein
DGPFAETKE family protein {ECO:0000313|EMBL:ABS27031.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
scnpilot_solids2_trim150_scaffold_392_curated_12
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11836..13104
DNA (1269bp) protein (423aa)
RNA polymerase subunit sigma-24 n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XHY5_SORCE
RNA polymerase subunit sigma-24
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:AGP32752.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
scnpilot_solids2_trim150_scaffold_392_curated_13
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13423..13779
DNA (357bp) protein (119aa)
DGPF domain protein 1 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HL81_ACHXA
DGPF domain-containing protein 1
DGPF domain protein 1 {ECO:0000313|EMBL:ADP16928.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
scnpilot_solids2_trim150_scaffold_392_curated_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13904..15484)
DNA (1581bp) protein (527aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000377F397
GntR family transcriptional regulator {ECO:0000313|EMBL:AHX15700.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
GntR family transcriptional regulator
scnpilot_solids2_trim150_scaffold_392_curated_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15607..16800
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036446C7
Uncharacterized protein {ECO:0000313|EMBL:AHX16473.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_solids2_trim150_scaffold_392_curated_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16870..17271
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037DCE32
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids2_trim150_scaffold_392_curated_17
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17326..17721
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CFII64 RepID=S6GUN1_9PSED
Membrane protein {ECO:0000313|EMBL:KFE57984.1}; TaxID=317 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_392_curated_18
Kangiella koreensis, Kangiella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17775..18305
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000376910A
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:ACV27809.1}; Flags: Precursor;; TaxID=523791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Kangiella.;" source="Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125).;"
scnpilot_solids2_trim150_scaffold_392_curated_19
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18475..19428)
DNA (954bp) protein (318aa)
Putative transcriptional regulator n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AGB1_COLFT
Transcriptional regulator {ECO:0000313|EMBL:AIY39316.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
putative transcriptional regulator
scnpilot_solids2_trim150_scaffold_392_curated_20
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19552..20517
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W607_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:GAN45842.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_392_curated_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20514..21149
DNA (636bp) protein (212aa)
Lysine exporter protein LysE/YggA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W606_9GAMM
Lysine exporter protein LysE/YggA {ECO:0000313|EMBL:EIL94897.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
homoserine/threonine efflux protein
scnpilot_solids2_trim150_scaffold_392_curated_22
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21197..22558
DNA (1362bp) protein (454aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002F057DD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ71120.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_solids2_trim150_scaffold_392_curated_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22592..23017)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRI3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95015.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Barstar (barnase inhibitor)
scnpilot_solids2_trim150_scaffold_392_curated_24
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23014..23454)
DNA (441bp) protein (147aa)
Ribonuclease n=1 Tax=Rhodanobacter sp. 115 RepID=I4WJE9_9GAMM
Ribonuclease {ECO:0000313|EMBL:EIL99590.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
guanyl-specific ribonuclease Sa
scnpilot_solids2_trim150_scaffold_392_curated_25

Not on your lists

comp(23454..25025)
DNA (1572bp) protein (524aa)
Peptidase S13, D-Ala-D-Ala carboxypeptidase C {ECO:0000313|EMBL:EQD37142.1}; EC=3.4.-.- {ECO:0000313|EMBL:EQD37142.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
D-alanyl-D-alanine carboxypeptidase; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
Peptidase S13, D-Ala-D-Ala carboxypeptidase C n=1 Tax=mine drainage metagenome RepID=T0YYZ6_9ZZZZ
scnpilot_solids2_trim150_scaffold_392_curated_26
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25031..25873)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEZ7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHX13770.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_392_curated_27
unknown

Not on your lists

comp(25870..26010)
DNA (141bp) protein (47aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_392_curated_28
unknown

Not on your lists

26181..26282
DNA (102bp) protein (34aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_392_curated_29
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26309..27136)
DNA (828bp) protein (276aa)
Protein FdhD homolog n=3 Tax=Xanthomonas campestris pv. campestris RepID=FDHD_XANC8
fdsC; formate dehydrogenase accessory protein; K02379 FdhD protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids2_trim150_scaffold_392_curated_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27206..29026
DNA (1821bp) protein (607aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003636E9C
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 1-30 of 44 in total

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