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AMDSBA1_53

Alias: AMDSBA1_C52

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Displaying items 1-30 of 53 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_53_1

Not on your lists

comp(121..669)
DNA (549bp) protein (183aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Gordonia amarae NBRC 15530 RepID=G7GJF8_9ACTO (db=UNIREF evalue=2.3e-24 bit_score=117.9 identity=41.2 coverage=90.1639344262295)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=1 to=180 evalue=3.3e-42 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like)
no description (db=Gene3D db_id=G3DSA:3.90.1570.10 from=8 to=180 evalue=2.8e-27 interpro_id=IPR012296 interpro_description=Nuclease, putative, TT1808)
AMDSBA1_53_2
unknown

Not on your lists

comp(779..1072)
DNA (294bp) protein (98aa)
coiled-coil (db=Coil db_id=coil from=28 to=49 evalue=NA)
seg (db=Seg db_id=seg from=78 to=97)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
AMDSBA1_53_3
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

comp(1228..1701)
DNA (474bp) protein (158aa)
DNA repair protein RadC
UPF0758 protein PD_0117 n=10 Tax=Xylella fastidiosa RepID=Y117_XYLFT (db=UNIREF evalue=9.0e-17 bit_score=92.4 identity=41.3 coverage=75.31645569620254)
seg (db=Seg db_id=seg from=141 to=155)
UPF0758 (db=PatternScan db_id=PS01302 from=95 to=100 evalue=0.0 interpro_id=IPR020891 interpro_description=Uncharacterised protein family UPF0758, conserved site)
AMDSBA1_53_4
unknown

Not on your lists

2143..2958
DNA (816bp) protein (272aa)
seg (db=Seg db_id=seg from=29 to=45)
seg (db=Seg db_id=seg from=145 to=156)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA1_53_5
unknown

Not on your lists

3054..3242
DNA (189bp) protein (63aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=25)
AMDSBA1_53_6
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3498..3821)
DNA (324bp) protein (108aa)
3498..3821 - ( gc_cont=0.543)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UKV0_RUMA7
Uncharacterized protein {ECO:0000313|EMBL:ADU24296.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 2
AMDSBA1_53_7
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3924..4394)
DNA (471bp) protein (157aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Desulfotomaculum kuznetsovii DSM 6115 RepID=F6CPM2_DESK7 (db=UNIREF evalue=4.4e-16 bit_score=90.1 identity=40.0 coverage=75.79617834394905)
Uncharacterized protein {ECO:0000313|EMBL:AEG14484.1}; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (
AMDSBA1_53_8
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4401..4739)
DNA (339bp) protein (113aa)
4401..4739 - ( gc_cont=0.611)
Uncharacterized protein {ECO:0000313|EMBL:AEG14484.1}; TaxID=760568 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum kuznetsovii (
AMDSBA1_53_9
unknown

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comp(4804..5103)
DNA (300bp) protein (100aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
AMDSBA1_53_10

Not on your lists

comp(5175..5720)
DNA (546bp) protein (182aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Haemophilus parasuis RepID=B0QVY5_HAEPR (db=UNIREF evalue=7.7e-20 bit_score=102.8 identity=35.7 coverage=87.91208791208791)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=1 to=180 evalue=1.9e-43 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like)
no description (db=Gene3D db_id=G3DSA:3.90.1570.10 from=8 to=180 evalue=2.8e-28 interpro_id=IPR012296 interpro_description=Nuclease, putative, TT1808)
AMDSBA1_53_11
unknown

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comp(5781..6011)
DNA (231bp) protein (77aa)
5781..6011 - ( gc_cont=0.532)
AMDSBA1_53_12
unknown

Not on your lists

comp(6044..6811)
DNA (768bp) protein (256aa)
seg (db=Seg db_id=seg from=157 to=167)
AMDSBA1_53_13
unknown

Not on your lists

comp(6750..6890)
DNA (141bp) protein (47aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA1_53_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6919..7323)
DNA (405bp) protein (135aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZZ7_9FIRM (db=UNIREF evalue=3.8e-16 bit_score=90.1 identity=40.2 coverage=74.07407407407408)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I7M3_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ41290.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA1_53_15
unknown

Not on your lists

comp(7464..7961)
DNA (498bp) protein (166aa)
7464..7961 - ( gc_cont=0.649)
AMDSBA1_53_16
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8145..8393
DNA (249bp) protein (83aa)
WGR domain-containing protein n=1 Tax=Sulfobacillus thermotolerans RepID=G5CIY0_9FIRM (db=UNIREF evalue=5.6e-10 bit_score=68.9 identity=41.9 coverage=84.33734939759037)
(db=HMMPfam db_id=PF05406 from=6 to=73 evalue=2.4e-09 interpro_id=IPR008893 interpro_description=WGR domain)
WGR domain-like (db=superfamily db_id=SSF142921 from=5 to=73 evalue=7.2e-06 interpro_id=IPR008893 interpro_description=WGR domain)
WGR domain-containing protein {ECO:0000313|EMBL:AEP14257.1}; TaxID=338644 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="
AMDSBA1_53_17
Arthrospira platensis, Arthrospira, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(8409..9911)
DNA (1503bp) protein (501aa)
hpaIM; methylase HpaI (EC:2.1.1.72)
DNA methylase N-4/N-6 domain protein n=1 Tax=Halopiger xanaduensis SH-6 RepID=F8D5N0_HALXS (db=UNIREF evalue=7.7e-38 bit_score=164.1 identity=42.2 coverage=42.91417165668663)
N6_MTASE (db=PatternScan db_id=PS00092 from=33 to=39 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=6 to=311 evalue=8.2e-66)
AMDSBA1_53_18
unknown

Not on your lists

comp(10028..10480)
DNA (453bp) protein (151aa)
10028..10480 - ( gc_cont=0.534)
AMDSBA1_53_19
unknown

Not on your lists

comp(10527..10844)
DNA (318bp) protein (106aa)
10527..10844 - ( gc_cont=0.550)
AMDSBA1_53_20
Pseudomonas amygdali, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10982..11842)
DNA (861bp) protein (287aa)
type II DNA restriction endonuclease R.NGOI
Type II restriction enzyme NgoMIV n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4D8_9FIRM (db=UNIREF evalue=1.1e-81 bit_score=308.9 identity=52.8 coverage=97.5609756097561)
(db=HMMPfam db_id=PF09015 from=14 to=284 evalue=8.6e-118 interpro_id=IPR015105 interpro_description=Restriction endonuclease, type II, NgoMIV)
AMDSBA1_53_21
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(11839..13134)
DNA (1296bp) protein (432aa)
hypothetical protein
hypothetical protein
Putative RNA methylase n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NR75_ROSCS (db=UNIREF evalue=3.9e-46 bit_score=191.4 identity=48.2 coverage=44.907407407407405)
N4_MTASE (db=PatternScan db_id=PS00093 from=257 to=262 evalue=0.0 interpro_id=IPR017985 interpro_description=DNA methylase, N-4 cytosine-specific, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: site-specific DNA-methyltransferase (cytosine-N4-specific) activity (GO:0015667), Biological Process: N-4 methylation of cytosine (GO:0090124))
AMDSBA1_53_22
unknown

Not on your lists

comp(13752..13958)
DNA (207bp) protein (69aa)
13752..13958 - ( gc_cont=0.502)
AMDSBA1_53_23
Candidatus Thiomargarita nelsonii, Thiomargarita, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14125..14592)
DNA (468bp) protein (156aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQS0_9SYNE (db=UNIREF evalue=1.7e-15 bit_score=88.2 identity=37.1 coverage=86.53846153846155)
Prophage ps3 protein 01 {ECO:0000313|EMBL:KHD03702.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomarg
Phage-associated protein n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FTX0_RHOMO
AMDSBA1_53_24
Acidithrix ferrooxidans, Acidithrix, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(14946..15845)
DNA (900bp) protein (300aa)
ISSod11, transposase
IS1595 transposase n=2 Tax=Synechococcus sp. WH 5701 RepID=A3YWR5_9SYNE (db=UNIREF evalue=1.2e-46 bit_score=192.6 identity=36.5 coverage=98.0)
ISXO2-like transposase domain protein {ECO:0000313|EMBL:KJF18784.1}; TaxID=1280514 species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidithrix.;" source="Acidith
Putative uncharacterized protein n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4H8_9BACT
AMDSBA1_53_25
unknown

Not on your lists

comp(16105..16320)
DNA (216bp) protein (72aa)
seg (db=Seg db_id=seg from=14 to=26)
AMDSBA1_53_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16445..16762)
DNA (318bp) protein (106aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U1Q6_9FIRM (db=UNIREF evalue=2.8e-22 bit_score=110.2 identity=56.6 coverage=97.16981132075472)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I7P0_SULAT
Uncharacterized protein {ECO:0000313|EMBL:AEJ38747.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA1_53_27
RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16873..19380)
DNA (2508bp) protein (836aa)
hypothetical protein
hypothetical protein
CP4-6 prophage n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BNS1_9GAMM (db=UNIREF evalue=5.1e-103 bit_score=381.3 identity=34.5 coverage=96.5311004784689)
AMDSBA1_53_28
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19377..21815)
DNA (2439bp) protein (813aa)
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Selenomonas sp. oral taxon 137 str. F0430 RepID=E4LJE2_9FIRM (db=UNIREF evalue=2.6e-107 bit_score=395.6 identity=39.2 coverage=74.53874538745387)
seg (db=Seg db_id=seg from=292 to=303)
seg (db=Seg db_id=seg from=510 to=521)
seg (db=Seg db_id=seg from=183 to=197)
AMDSBA1_53_29
Anoxybacillus flavithermus, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21858..22274)
DNA (417bp) protein (139aa)
Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum RepID=A3EUU6_9BACT (db=UNIREF evalue=6.2e-22 bit_score=109.4 identity=42.6 coverage=98.56115107913669)
Uncharacterized protein {ECO:0000313|EMBL:ELK20762.1}; TaxID=1267580 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Anoxybacillus.;" source="Anoxybacillus flavithermus TNO-09.006.;"
GIY-YIG catalytic domain.
AMDSBA1_53_30
unknown

Not on your lists

comp(22584..23168)
DNA (585bp) protein (195aa)
22584..23168 - ( gc_cont=0.544)
Displaying items 1-30 of 53 in total

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