ggKbase home page

AMDSBA3_84

Alias: AMDSBA3_C83

Search features with annotation key words

Displaying 11 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA3_84_1
unknown

Not on your lists

2..1459
DNA (1458bp) protein (486aa)
seg (db=Seg db_id=seg from=377 to=388)
(db=HMMPfam db_id=PF01841 from=318 to=427 evalue=3.9e-11 interpro_id=IPR002931 interpro_description=Transglutaminase-like)
Cysteine proteinases (db=superfamily db_id=SSF54001 from=309 to=427 evalue=5.0e-10)
no description (db=HMMSmart db_id=SM00460 from=365 to=436 evalue=0.00055 interpro_id=IPR002931 interpro_description=Transglutaminase-like)
AMDSBA3_84_2
unknown

Not on your lists

comp(1792..2007)
DNA (216bp) protein (72aa)
1792..2007 - ( gc_cont=0.500)
AMDSBA3_84_3
unknown

Not on your lists

comp(1982..2431)
DNA (450bp) protein (150aa)
seg (db=Seg db_id=seg from=121 to=131)
seg (db=Seg db_id=seg from=40 to=81)
coiled-coil (db=Coil db_id=coil from=113 to=134 evalue=NA)
AMDSBA3_84_4
unknown

Not on your lists

comp(2524..3285)
DNA (762bp) protein (254aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=203 to=225)
transmembrane_regions (db=TMHMM db_id=tmhmm from=174 to=196)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=40)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=85)
AMDSBA3_84_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3727..4467
DNA (741bp) protein (247aa)
hypothetical protein
Putative uncharacterized protein orfL18 n=2 Tax=Sulfobacillus thermotolerans RepID=G5CIY9_9FIRM (db=UNIREF evalue=1.6e-41 bit_score=175.3 identity=42.2 coverage=95.95141700404858)
seg (db=Seg db_id=seg from=168 to=180)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
AMDSBA3_84_6
unknown

Not on your lists

4566..5333
DNA (768bp) protein (256aa)
seg (db=Seg db_id=seg from=79 to=91)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=25 evalue=6.0)
AMDSBA3_84_7
Saccharomyces cerevisiae, Saccharomyces, Saccharomycetales, Saccharomycetes, Ascomycota, Fungi

Not on your lists

5486..7780
DNA (2295bp) protein (765aa)
seg (db=Seg db_id=seg from=694 to=711)
seg (db=Seg db_id=seg from=659 to=674)
seg (db=Seg db_id=seg from=460 to=506)
seg (db=Seg db_id=seg from=309 to=323)
AMDSBA3_84_8
unknown

Not on your lists

8006..8824
DNA (819bp) protein (273aa)
seg (db=Seg db_id=seg from=43 to=52)
AMDSBA3_84_9
BJP_08E140C01_Desulfomicrobium_58_14, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8875..9312
DNA (438bp) protein (146aa)
diguanylate cyclase/phosphodiesterase
Putative uncharacterized protein n=1 Tax=Azospirillum sp. B510 RepID=D3NRG5_AZOS1 (db=UNIREF evalue=4.1e-08 bit_score=63.5 identity=34.5 coverage=91.0958904109589)
EAL domain-like (db=superfamily db_id=SSF141868 from=7 to=145 evalue=1.0e-16 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
(db=HMMPfam db_id=PF00563 from=7 to=142 evalue=1.1e-14 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBA3_84_10
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9488..9886
DNA (399bp) protein (133aa)
transposase
Transposase IS200-family protein n=2 Tax=Methanocaldococcaceae RepID=D3S4E3_METSF (db=UNIREF evalue=3.1e-34 bit_score=150.2 identity=51.6 coverage=93.98496240601504)
(db=HMMPfam db_id=PF01797 from=13 to=129 evalue=1.7e-40 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
Transposase IS200-like (db=superfamily db_id=SSF143422 from=2 to=130 evalue=3.8e-39 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
AMDSBA3_84_11
Aneurinibacillus migulanus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9889..10983
DNA (1095bp) protein (365aa)
transposase IS605 OrfB family
Putative transposase n=1 Tax=Lactococcus phage 949 RepID=E0YIX8_9CAUD (db=UNIREF evalue=1.1e-38 bit_score=166.4 identity=33.3 coverage=97.26027397260275)
seg (db=Seg db_id=seg from=216 to=238)
coiled-coil (db=Coil db_id=coil from=228 to=249 evalue=NA)
Displaying 11 items

View Taxonomy