ggKbase home page

TCU_4

Alias: TCU_CJH806611.1

Search features with annotation key words

Displaying 30 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
TCU_4_1
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1..282)
DNA (282bp) protein (94aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 RepID=F8ICS3_ALIAT (db=UNIREF evalue=8.0e-13 bit_score=78.6 identity=45.2 coverage=98.936170212766)
seg (db=Seg db_id=seg from=55 to=69)
Uncharacterized protein {ECO:0000313|EMBL:AEJ43738.1}; TaxID=1048834 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldariu
TCU_4_2
unknown

Not on your lists

comp(407..613)
DNA (207bp) protein (69aa)
seg (db=Seg db_id=seg from=24 to=50)
seg (db=Seg db_id=seg from=52 to=63)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
TCU_4_3
unknown

Not on your lists

727..891
DNA (165bp) protein (55aa)
727..891 + ( gc_cont=0.618)
TCU_4_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2539..3363)
DNA (825bp) protein (275aa)
Type II secretion system F domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUP0_9FIRM (db=UNIREF evalue=4.7e-45 bit_score=187.2 identity=41.5 coverage=97.8181818181818)
type II secretion system F domain-containing protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=245 to=267)
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
TCU_4_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3738..4055)
DNA (318bp) protein (106aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUN8_9FIRM (db=UNIREF evalue=3.5e-09 bit_score=66.6 identity=38.8 coverage=79.2452830188679)
seg (db=Seg db_id=seg from=50 to=63)
Uncharacterized protein {ECO:0000313|EMBL:AEJ40854.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
TCU_4_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4076..4393)
DNA (318bp) protein (106aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TUN8_9FIRM (db=UNIREF evalue=8.7e-08 bit_score=62.0 identity=41.3 coverage=88.6792452830189)
seg (db=Seg db_id=seg from=9 to=22)
seg (db=Seg db_id=seg from=49 to=62)
TCU_4_7
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4475..5866)
DNA (1392bp) protein (464aa)
transposase IS605 OrfB rbh
transposase IS605 OrfB rbh
Transposase IS605 OrfB n=2 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WTX5_BACT2 (db=UNIREF evalue=1.3e-225 bit_score=787.7 identity=82.1 coverage=99.5689655172414)
seg (db=Seg db_id=seg from=196 to=209)
TCU_4_8
unknown

Not on your lists

6084..6527
DNA (444bp) protein (148aa)
6084..6527 + ( gc_cont=0.565)
TCU_4_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7292..8380
DNA (1089bp) protein (363aa)
transposase IS4 family protein
transposase IS4 family protein
Transposase IS4 family protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0Z6_9FIRM (db=UNIREF evalue=7.7e-181 bit_score=638.6 identity=87.8 coverage=96.6942148760331)
TCU_4_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8367..8594
DNA (228bp) protein (76aa)
transposase IS4 family protein
Transposase IS4 family protein n=2 Tax=Sulfobacillus acidophilus RepID=G8U0Z6_9FIRM (db=UNIREF evalue=9.3e-28 bit_score=127.9 identity=86.5 coverage=96.0526315789474)
seg (db=Seg db_id=seg from=60 to=71)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=61)
TCU_4_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8733..11372
DNA (2640bp) protein (880aa)
Formate dehydrogenase, alpha subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TWF6_9FIRM (db=UNIREF evalue=0.0 bit_score=1297.3 identity=71.7 coverage=97.3863636363636)
formate dehydrogenase subunit alpha (EC:1.7.99.4)
seg (db=Seg db_id=seg from=70 to=82)
MOLYBDOPTERIN_PROK_1 (db=PatternScan db_id=PS00551 from=144 to=161 evalue=0.0 interpro_id=IPR006655 interpro_description=Molybdopterin oxidoreductase, prokaryotic, conserved site GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: oxidoreductase activity, acting on other nitrogenous compounds as donors (GO:0016661), Biological Process: oxidation-reduction process (GO:0055114))
TCU_4_12
Halobacillus halophilus, Halobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11353..11832
DNA (480bp) protein (160aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWF7_9FIRM (db=UNIREF evalue=9.4e-14 bit_score=82.4 identity=35.0 coverage=90.625)
seg (db=Seg db_id=seg from=34 to=47)
(db=HMMPfam db_id=PF07849 from=114 to=154 evalue=5.0e-08 interpro_id=IPR012440 interpro_description=Protein of unknown function DUF1641)
TCU_4_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11919..13028)
DNA (1110bp) protein (370aa)
Shikimate/quinate 5-dehydrogenase n=2 Tax=Sulfobacillus acidophilus RepID=G8TY62_9FIRM (db=UNIREF evalue=6.3e-138 bit_score=496.1 identity=72.7 coverage=94.8648648648649)
shikimate/quinate 5-dehydrogenase
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=127 to=252 evalue=8.0e-14)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=132 to=256 evalue=8.5e-09 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
TCU_4_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13569..14219
DNA (651bp) protein (217aa)
CarD family transcriptional regulator
Transcriptional regulator, Crp/Fnr family n=2 Tax=Sulfobacillus acidophilus RepID=G8U187_9FIRM (db=UNIREF evalue=1.3e-50 bit_score=205.3 identity=47.1 coverage=93.5483870967742)
cAMP-binding domain-like (db=superfamily db_id=SSF51206 from=6 to=128 evalue=5.4e-23 interpro_id=IPR018490 interpro_description=Cyclic nucleotide-binding-like)
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=6 to=136 evalue=1.9e-20 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
TCU_4_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14623..14847
DNA (225bp) protein (75aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TS17_9FIRM (db=UNIREF evalue=8.0e-16 bit_score=88.2 identity=60.3 coverage=96.0)
(db=HMMPfam db_id=PF10006 from=4 to=70 evalue=3.1e-13 interpro_id=IPR018720 interpro_description=Domain of unknown function DUF2249)
Uncharacterized protein {ECO:0000313|EMBL:AEW04343.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
TCU_4_16
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15158..16360
DNA (1203bp) protein (401aa)
Transporter, CPA2 family n=1 Tax=Paenibacillus sp. HGF7 RepID=F5LQM8_9BACL (db=UNIREF evalue=2.2e-51 bit_score=208.8 identity=34.7 coverage=93.2668329177057)
sodium/hydrogen exchanger
transmembrane_regions (db=TMHMM db_id=tmhmm from=334 to=356)
transmembrane_regions (db=TMHMM db_id=tmhmm from=299 to=321)
TCU_4_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16323..18104)
DNA (1782bp) protein (594aa)
citrate transporter
citrate transporter
TrkA-C domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY73_9FIRM (db=UNIREF evalue=1.5e-112 bit_score=412.5 identity=38.9 coverage=97.979797979798)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=41)
TCU_4_18
unknown

Not on your lists

18701..19228
DNA (528bp) protein (176aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
TCU_4_19
unknown

Not on your lists

comp(19729..20271)
DNA (543bp) protein (181aa)
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=60 evalue=2.4e-06 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=1 to=60 evalue=0.00074 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
TCU_4_20
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(21088..22278)
DNA (1191bp) protein (397aa)
Transposase, IS4 family protein n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLT9_9FIRM (db=UNIREF evalue=3.0e-69 bit_score=268.1 identity=40.8 coverage=97.4811083123426)
transposase, IS4 family protein
seg (db=Seg db_id=seg from=33 to=45)
(db=HMMPfam db_id=PF01609 from=137 to=386 evalue=1.5e-18 interpro_id=IPR002559 interpro_description=Transposase, IS4-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
TCU_4_21
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22349..23326
DNA (978bp) protein (326aa)
hypothetical protein
hypothetical protein Plarl_24006 n=2 Tax=Paenibacillus larvae subsp. larvae RepID=UPI000169373B (db=UNIREF evalue=4.0e-35 bit_score=154.5 identity=34.5 coverage=76.3803680981595)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=64)
seg (db=Seg db_id=seg from=295 to=324)
TCU_4_22
Paenibacillus larvae, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23545..24447)
DNA (903bp) protein (301aa)
hypothetical protein
hypothetical protein Plarl_24006 n=2 Tax=Paenibacillus larvae subsp. larvae RepID=UPI000169373B (db=UNIREF evalue=6.2e-51 bit_score=206.8 identity=42.6 coverage=79.4019933554817)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
Uncharacterised conserved protein, UCP032442 type (db=HMMPIR db_id=PIRSF032442 from=1 to=295 evalue=2.3e-48 interpro_id=IPR016997 interpro_description=Uncharacterised conserved protein UCP032442)
TCU_4_23
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

comp(24459..25772)
DNA (1314bp) protein (438aa)
asparagine synthase
asparagine synthase
Asparagine synthetase n=5 Tax=Geobacillus RepID=G8MY34_GEOTH (db=UNIREF evalue=1.7e-97 bit_score=362.1 identity=45.3 coverage=98.4018264840183)
TCU_4_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26111..26776)
DNA (666bp) protein (222aa)
transposase IS66
Transposase IS66 n=1 Tax=Sulfobacillus acidophilus TPY RepID=F8IAQ6_SULAT (db=UNIREF evalue=2.7e-75 bit_score=287.3 identity=75.1 coverage=83.3333333333333)
Transposase IS66 {ECO:0000313|EMBL:AEJ40378.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfobacillu
TCU_4_25
Brevibacillus brevis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26978..27310)
DNA (333bp) protein (111aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZIN5_BREBN (db=UNIREF evalue=1.1e-24 bit_score=118.2 identity=51.4 coverage=98.1981981981982)
(db=HMMPfam db_id=PF03050 from=6 to=108 evalue=6.1e-15 interpro_id=IPR004291 interpro_description=Transposase, IS66)
Putative uncharacterized protein {ECO:0000313|EMBL:BAH41253.1}; TaxID=358681 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus brevis (strain
TCU_4_26
Brevibacillus sp. CF112, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27728..28030)
DNA (303bp) protein (101aa)
IS66 Orf2 family protein n=4 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius RepID=F8ICR8_ALIAT (db=UNIREF evalue=2.1e-27 bit_score=127.1 identity=60.0 coverage=98.019801980198)
IS66 Orf2 family protein
(db=HMMPfam db_id=PF05717 from=1 to=92 evalue=6.2e-30 interpro_id=IPR008878 interpro_description=Transposase IS66, Orf2)
Transposase {ECO:0000313|EMBL:EJL38657.1}; TaxID=1144311 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus sp. CF112.;"
TCU_4_27
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28080..28394)
DNA (315bp) protein (105aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I1K5_DESAP (db=UNIREF evalue=3.3e-15 bit_score=86.7 identity=45.2 coverage=95.2380952380952)
seg (db=Seg db_id=seg from=55 to=69)
Uncharacterized protein {ECO:0000313|EMBL:ACA58765.1}; TaxID=477974 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviato
TCU_4_28
unknown

Not on your lists

28493..28810
DNA (318bp) protein (106aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=88)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=61)
seg (db=Seg db_id=seg from=4 to=15)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
TCU_4_29
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28814..30034
DNA (1221bp) protein (407aa)
major facilitator transporter
Permease n=3 Tax=Bacillus cereus RepID=C2TVB3_BACCE (db=UNIREF evalue=1.5e-60 bit_score=239.2 identity=33.4 coverage=93.8574938574938)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
transmembrane_regions (db=TMHMM db_id=tmhmm from=87 to=109)
TCU_4_30
unknown

Not on your lists

30143..30355
DNA (213bp) protein (71aa)
30143..30355 + ( gc_cont=0.432)
Displaying 30 items

View Taxonomy