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RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_1
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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3..509
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GSX4_THISH
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_2
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

502..2442
DNA (1941bp) protein (647aa)
excinuclease ABC subunit C n=1 Tax=Methylomonas sp. MK1 RepID=UPI000379BBC2
uvrC; excinuclease ABC subunit C Tax=RBG_16_Gamma2_65_34_curated
uvrC; UvrABC system protein C
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_3
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2447..3040
DNA (594bp) protein (198aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DG49_9GAMM
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=RBG_16_Gamma2_65_34_curated
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_trna_1
unknown

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3083..3155
DNA (73bp)
transferRNA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_trna_2
unknown

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3215..3285
DNA (71bp)
transferRNA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_4
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3521..3880
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003679B69
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_5
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3877..4188
DNA (312bp) protein (104aa)
Fis family transcriptional regulator n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003778125
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_trna_3
unknown

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4255..4340
DNA (86bp)
transferRNA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_6
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4404..5300)
DNA (897bp) protein (299aa)
TatD family hydrolase; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein n=1 Tax=Methylophilus methylotrophus RepID=UPI0003726B93
TatD family hydrolase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_7
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5304..5702)
DNA (399bp) protein (133aa)
Type IV pilus assembly PilZ n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A8S4_ALKEH
type IV pilus assembly PilZ; K02676 type IV pilus assembly protein PilZ Tax=RBG_16_Gamma2_65_34_curated
type IV pilus assembly PilZ
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_8
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5707..6723)
DNA (1017bp) protein (339aa)
holB; DNA polymerase III, delta prime subunit (EC:2.7.7.7); K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] Tax=RBG_16_Gamma2_65_34_curated
holB; DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III, delta prime subunit n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q606M1_METCA
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_9
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6710..7342)
DNA (633bp) protein (211aa)
Thymidylate kinase n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BY68_9GAMM
thymidylate kinase Tax=RBG_16_Gamma2_65_34_curated
thymidylate kinase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_10
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7347..8390)
DNA (1044bp) protein (348aa)
Aminodeoxychorismate lyase , YceG protein n=2 Tax=sulfur-oxidizing symbionts RepID=G2DC09_9GAMM
aminodeoxychorismate lyase; K07082 UPF0755 protein Tax=RBG_16_Gamma2_65_34_curated
aminodeoxychorismate lyase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_11
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8365..9198)
DNA (834bp) protein (278aa)
aminodeoxychorismate lyase; K02619 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] Tax=RBG_16_Gamma2_65_34_curated
Aminodeoxychorismate lyase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BZF8_NITHN
aminodeoxychorismate lyase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_12
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9195..10607)
DNA (1413bp) protein (471aa)
hypothetical protein; K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=RBG_16_Gamma2_65_34_curated
Anthranilate synthase component I n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BUV6_9GAMM
hypothetical protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_13
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10604..11848)
DNA (1245bp) protein (415aa)
fabF; beta-ketoacyl synthase (EC:2.3.1.179) Tax=RBG_16_Gamma2_65_34_curated
fabF; beta-ketoacyl synthase (EC:2.3.1.179)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AC81_9PROT
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_14
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11942..12181)
DNA (240bp) protein (80aa)
acyl carrier protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037A77E0
acpP; acyl carrier protein Tax=RBG_16_Gamma2_65_34_curated
acpP; acyl carrier protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_15
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12278..13021)
DNA (744bp) protein (248aa)
3-oxoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RBG_16_Gamma2_65_34_curated
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DWK8_9GAMM
3-oxoacyl-ACP reductase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_16
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13156..14094)
DNA (939bp) protein (313aa)
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RBG_16_Gamma2_65_34_curated
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FIE3_9GAMM
malonyl CoA-acyl carrier protein transacylase
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_17
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14230..15198)
DNA (969bp) protein (323aa)
3-oxoacyl-(acyl carrier protein) synthase III (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RBG_16_Gamma2_65_34_curated
3-oxoacyl-[acyl-carrier-protein] synthase III (EC:2.3.1.180)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=2 Tax=sulfur-oxidizing symbionts RepID=G2FIE2_9GAMM
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_18
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15195..16214)
DNA (1020bp) protein (340aa)
glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RBG_16_Gamma2_65_34_curated
phosphate acyltransferase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000365F050
glycerol-3-phosphate acyltransferase PlsX
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_19
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16253..16438)
DNA (186bp) protein (62aa)
50S ribosomal protein L32 n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RUG0_ALLVD
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32 Tax=RBG_16_Gamma2_65_34_curated
50S ribosomal protein L32
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_20
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16462..16986)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZZ5_9GAMM
yceD_[C]; putative metal-binding, possibly nucleic acid-binding protein Tax=RBG_16_Gamma2_65_34_curated
metal-binding protein
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_21
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17298..18716
DNA (1419bp) protein (473aa)
Pyruvate carboxylase subunit A n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AH10_9PROT
pyruvate carboxylase subunit A Tax=RBG_16_Gamma2_65_34_curated
pyruvate carboxylase subunit A
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_22
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18735..20567
DNA (1833bp) protein (611aa)
pyruvate carboxylase subunit B (EC:6.4.1.1) Tax=RBG_16_Gamma2_65_34_curated
pyruvate carboxylase subunit B (EC:6.4.1.1)
pyruvate carboxylase n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000366645B
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_23
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20679..21254
DNA (576bp) protein (192aa)
Maf-like protein SCD_n01541 n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AC85_9PROT
maf protein, putative Tax=RBG_16_Gamma2_65_34_curated
maf protein, putative
RBG_16_Gammaproteobacteria_65_34_RBG_16_scaffold_2018_24
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21367..22350)
DNA (984bp) protein (328aa)
signal peptide peptidase SppA, 36K type; K04773 protease IV [EC:3.4.21.-] Tax=RBG_16_Gamma2_65_34_curated
Signal peptide peptidase SppA, 36K type n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BW43_NITHN
signal peptide peptidase SppA, 36K type
Displaying 27 items

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