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RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36

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Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_1
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(118..564)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 id=2031484 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
rplI; 50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 Tax=GWE2_Bacteroidetes_40_63_curated
rplI; 50S ribosomal protein L9
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_2
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(580..849)
DNA (270bp) protein (90aa)
30S ribosomal protein S18 id=2031486 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 Tax=GWE2_Bacteroidetes_40_63_curated
30S ribosomal protein S18
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_3
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(853..1203)
DNA (351bp) protein (117aa)
30S ribosomal protein S6 id=2031488 bin=GWD2_Bacteroidetes_40_43 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6 Tax=GWE2_Bacteroidetes_40_63_curated
30S ribosomal protein S6
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_4
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1539..3446
DNA (1908bp) protein (636aa)
AMP-forming long-chain acyl-CoA synthetase Tax=GWE2_Bacteroidetes_40_63_curated
AMP-forming long-chain acyl-CoA synthetase id=3584715 bin=GWC2_Bacteroidetes_40_13 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
AMP-forming long-chain acyl-CoA synthetase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_5
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3547..4236)
DNA (690bp) protein (230aa)
id=2031497 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=2031497 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_6
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4450..6006
DNA (1557bp) protein (519aa)
citF; Citrate lyase subunit alpha; K01643 citrate lyase subunit alpha / citrate CoA-transferase [EC:4.1.3.6 2.8.3.10] Tax=GWE2_Bacteroidetes_40_63_curated
Citrate lyase, alpha subunit id=2147156 bin=GWE2_Bacteroidetes_40_63 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_Bacteroidetes_40_63 organism_group=Bacteroidetes organism_desc=Good
citF; Citrate lyase subunit alpha
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_7
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6080..8437
DNA (2358bp) protein (786aa)
integral membrane sensor signal transduction histidine kinase Tax=GWE2_Bacteroidetes_40_63_curated
Lipoprotein, putative id=3584707 bin=GWC2_Bacteroidetes_40_13 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
integral membrane sensor signal transduction histidine kinase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_8
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(8701..9048)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 id=3371508 bin=GWF2_Bacteroidetes_40_13 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=GWE2_Bacteroidetes_40_63_curated
50S ribosomal protein L19
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_9
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9262..11097)
DNA (1836bp) protein (612aa)
peptidase U34 Tax=GWE2_Bacteroidetes_40_63_curated
Peptidase U34 dipeptidase id=2031505 bin=GWD2_Bacteroidetes_40_43 species=Odoribacter splanchnicus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
peptidase U34
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_10
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11300..23194
DNA (11895bp) protein (3965aa)
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
PKD domain containing protein id=2031508 bin=GWD2_Bacteroidetes_40_43 species=Methanosarcina barkeri genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
cell surface protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_11
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23398..23970
DNA (573bp) protein (191aa)
Uncharacterized protein id=2031511 bin=GWD2_Bacteroidetes_40_43 species=Flavobacterium sp. F52 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_12
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24004..24270
DNA (267bp) protein (89aa)
id=2031513 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=2031513 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_13
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24278..26014)
DNA (1737bp) protein (579aa)
peptidase M23 Tax=GWE2_Bacteroidetes_40_63_curated
Metalloendopeptidase-like membrane protein id=2031515 bin=GWD2_Bacteroidetes_40_43 species=Joostella marina genus=Joostella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
peptidase M23
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_14
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26146..26562)
DNA (417bp) protein (139aa)
Secondary thiamine-phosphate synthase enzyme id=3584685 bin=GWC2_Bacteroidetes_40_13 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_15
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26618..28354)
DNA (1737bp) protein (579aa)
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain i; K01840 phosphomannomutase [EC:5.4.2.8] Tax=GWE2_Bacteroidetes_40_63_curated
Phosphomannomutase (EC:5.4.2.8)
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I id=3371530 bin=GWF2_Bacteroidetes_40_13 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_16
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28394..29269)
DNA (876bp) protein (292aa)
rfbD; dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase id=3371534 bin=GWF2_Bacteroidetes_40_13 species=gut metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes
dtdp-4-dehydrorhamnose reductase Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_17
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29253..29819)
DNA (567bp) protein (189aa)
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13); K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] Tax=GWE2_Bacteroidetes_40_63_curated
dTDP-4-dehydrorhamnose 3,5-epimerase (EC:5.1.3.13)
dTDP-4-dehydrorhamnose 3,5 epimerase id=3584674 bin=GWC2_Bacteroidetes_40_13 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_18
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29822..30769)
DNA (948bp) protein (316aa)
putative dNTP-hexose dehydratase-epimerase id=3584670 bin=GWC2_Bacteroidetes_40_13 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
dNTP-hexose dehydratase-epimerase Tax=GWE2_Bacteroidetes_40_63_curated
NAD-dependent dehydratase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_19
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


31356..33266
DNA (1911bp) protein (637aa)
RNA binding S1 domain-containing protein; K02945 small subunit ribosomal protein S1 Tax=GWE2_Bacteroidetes_40_63_curated
30S ribosomal protein S1 id=2031530 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
RNA binding S1 domain-containing protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_20
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33356..33706
DNA (351bp) protein (117aa)
anti-anti-sigma factor id=3584662 bin=GWC2_Bacteroidetes_40_13 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
anti-anti-sigma factor Tax=GWE2_Bacteroidetes_40_63_curated
anti-anti-sigma factor
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_21
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33706..34620
DNA (915bp) protein (305aa)
Ribonuclease Z; K00784 ribonuclease Z [EC:3.1.26.11] Tax=GWE2_Bacteroidetes_40_63_curated
Ribonuclease Z id=2031535 bin=GWD2_Bacteroidetes_40_43 species=Bacteroides coprocola genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
ribonuclease Z
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_22
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34696..36264
DNA (1569bp) protein (523aa)
GMP synthase (glutamine-hydrolyzing) (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=GWE2_Bacteroidetes_40_63_curated
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] id=3584507 bin=GWC2_Bacteroidetes_40_13 species=Alistipes indistinctus genus=Alistipes taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Bacteroidetes_40_13 organism_group=Bacteroidetes
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_23
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36473..39133)
DNA (2661bp) protein (887aa)
hypothetical protein
Uncharacterized protein Tax=GWE2_Bacteroidetes_40_63_curated
Uncharacterized protein id=2031537 bin=GWD2_Bacteroidetes_40_43 species=Pontibacter sp. BAB1700 genus=Pontibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_24
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

39179..39364
DNA (186bp) protein (62aa)
id=2031538 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=2031538 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_25
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

39357..40595
DNA (1239bp) protein (413aa)
citE; Citrate lyase subunit beta; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34] Tax=GWE2_Bacteroidetes_40_63_curated
HpcH/HpaI aldolase id=2031539 bin=GWD2_Bacteroidetes_40_43 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
citE; Citrate lyase subunit beta
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_26
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(40660..43356)
DNA (2697bp) protein (899aa)
hypothetical protein Tax=GWE2_Bacteroidetes_40_63_curated
Putative uncharacterized protein id=2031566 bin=GWD2_Bacteroidetes_40_43 species=Runella slithyformis genus=Runella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
hypothetical protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_27
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(43524..45308)
DNA (1785bp) protein (595aa)
TPR domain protein Tax=GWE2_Bacteroidetes_40_63_curated
TPR domain protein id=2031569 bin=GWD2_Bacteroidetes_40_43 species=Psychroflexus torquis genus=Psychroflexus taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
TPR domain protein
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_28
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(45462..47096)
DNA (1635bp) protein (545aa)
long-chain-fatty-acid--CoA ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] Tax=GWE2_Bacteroidetes_40_63_curated
Long-chain-fatty-acid-CoA ligase id=2031571 bin=GWD2_Bacteroidetes_40_43 species=gut metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
long-chain-fatty-acid--CoA ligase
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_29
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(47176..47298)
DNA (123bp) protein (41aa)
id=2031573 bin=GWD2_Bacteroidetes_40_43 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
id=2031573 Tax=GWE2_Bacteroidetes_40_63_curated
RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_36_30
GWE2_Bacteroidetes_40_63_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(47298..47495)
DNA (198bp) protein (66aa)
exodeoxyribonuclease 7 small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6] Tax=GWE2_Bacteroidetes_40_63_curated
Exonuclease VII small subunit id=2031574 bin=GWD2_Bacteroidetes_40_43 species=Marinilabilia salmonicolor genus=Marinilabilia taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_40_43 organism_group=Bacteroidetes organism_desc=a63
exodeoxyribonuclease VII
Displaying items 1-30 of 104 in total

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