ggKbase home page

RIFOXYC2_FULL_Bacteroidetes_40_12_rifoxyc2_full_scaffold_310_41

Organism: Bacteroidetes bacterium RIFOXYC2_FULL_40_12

near complete RP 52 / 55 MC: 2 BSCG 50 / 51 ASCG 14 / 38
Location: comp(51807..52379)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor id=4433544 bin=GWF2_Bacteroidetes_40_13 species=Prosthecochloris aestuarii genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWF2_Bacteroidetes_40_13 organism_group=Bacteroidetes similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 191.0
  • Bit_score: 374
  • Evalue 8.10e-101
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=GWE2_Bacteroidetes_40_63_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 190.0
  • Bit_score: 373
  • Evalue 1.50e-100
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 48.9
  • Coverage: 186.0
  • Bit_score: 185
  • Evalue 2.00e-44

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

GWE2_Bacteroidetes_40_63_curated → Bacteroidia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 573
GTGGAAAACGAATTAATCAAAAATCTACAGCTAGGCTCTGAAAGTGCATTCCGGGAGATTGTCGATTTATATAAAAACAAAGTGGTGAATACCTGCTTTGGATTTGTAAATAATGCTGCGGATGCCGATGACCTGGCACAGGAGGTTTTTGTTGAAGTTTTTCAGTCGATACATTATTTCAACCAAGATTCAACATTGTCAACCTGGATTTACCGGATCAGCGTGAATAAGTCGTTGGACCATTTACGAAAAATAAACCGGAAAAAACGTTGGGCCCAATTAATCAGGCTTACAACGCAAGCCAATGAAATCAACGATTCGTTAATTGCACATGAGCAGACTCCCGAATCAGCCCTTGAAGATAAGGAACGGTTAAAAGTATTACTCCAGGCTATTGGCAAGCTACCTGAAAACCAAAGAACTGCTTTTACTTTGCATAAAAATGAAGATTTAAGCTACAAAGAGATTTCTGAGGTTATGAAAACCAGTGTATCATCCGTTGAATCGTTGATTCACAGAGCAAAAAAGAACCTGAAAGAATCGTTGACTCATTATTACGCTTCAGAAAAATAA
PROTEIN sequence
Length: 191
VENELIKNLQLGSESAFREIVDLYKNKVVNTCFGFVNNAADADDLAQEVFVEVFQSIHYFNQDSTLSTWIYRISVNKSLDHLRKINRKKRWAQLIRLTTQANEINDSLIAHEQTPESALEDKERLKVLLQAIGKLPENQRTAFTLHKNEDLSYKEISEVMKTSVSSVESLIHRAKKNLKESLTHYYASEK*