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A1-16-all-fractions_metab_12

wsip-metawrap-drep-bins_Actinobacteria_71_1
In projects: wsip-metawrap-drep-bins  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: wsip-metawrap-drep-bins_UNK

Properties

Avg. coverage: 0.66 Longest contig: 21.82 Kbp Bin length: 5.34 Mbp GC content: 70.72 %
Contigs count: 1126 Features count: 5687 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 38 / 55 MC: 8 BSCG 37 / 51 MC: 13 ASCG 10 / 38 MC: 1
Displaying items 51-100 of 1126 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
A1-16-all-fractions_k255_2338331
Class: Actinobacteria (91.67%)
12 12547 bp 70.99 0.63 92.08
A1-16-all-fractions_k255_2431820
Class: Actinobacteria (83.33%)
12 10998 bp 72.50 0.64 92.53
A1-16-all-fractions_k255_94489
Order: Streptosporangiales (50%)
12 11336 bp 69.62 0.41 91.62
A1-16-all-fractions_k255_4869007
Order: Streptosporangiales (75%)
12 14535 bp 72.14 0.90 89.87
A1-16-all-fractions_k255_1676719
Class: Actinobacteria (91.67%)
12 16953 bp 70.48 0.66 85.51
A1-16-all-fractions_k255_1687074
Domain: Bacteria (58.33%)
12 14030 bp 69.70 0.64 84.29
A1-16-all-fractions_k255_1778094
Class: Actinobacteria (75%)
12 14577 bp 72.24 0.69 91.69
A1-16-all-fractions_k255_559272
Order: Streptosporangiales (58.33%)
12 10695 bp 71.25 0.63 96.38
A1-16-all-fractions_k255_3003291
Class: Actinobacteria (91.67%)
12 11652 bp 71.44 0.79 85.84
A1-16-all-fractions_k255_685644
Class: Actinobacteria (100%)
12 13503 bp 71.14 0.64 92.71
A1-16-all-fractions_k255_3070163
Class: Actinobacteria (91.67%)
12 14607 bp 70.83 0.66 99.49
A1-16-all-fractions_k255_765057
Class: Actinobacteria (72.73%)
11 11770 bp 69.13 0.54 93.70
A1-16-all-fractions_k255_918288
Class: Actinobacteria (100%)
11 7562 bp 71.50 1.05 85.89
A1-16-all-fractions_k255_929338
Class: Actinobacteria (90.91%)
11 11626 bp 72.09 0.55 91.11
A1-16-all-fractions_k255_3266774
Class: Actinobacteria (81.82%)
11 8066 bp 71.08 7.48 89.41
A1-16-all-fractions_k255_3371891
Class: Actinobacteria (90.91%)
11 13586 bp 70.06 0.32 93.67
A1-16-all-fractions_k255_1119380
Phylum: Actinobacteria (54.55%)
11 8550 bp 70.23 0.51 93.16
A1-16-all-fractions_k255_3398808
Class: Actinobacteria (81.82%)
11 8625 bp 69.68 0.82 94.99
A1-16-all-fractions_k255_1145556
Class: Actinobacteria (72.73%)
11 12762 bp 70.93 0.36 87.31
A1-16-all-fractions_k255_4603882
Class: Actinobacteria (72.73%)
11 8603 bp 69.52 0.66 92.17
A1-16-all-fractions_k255_2347962
Class: Actinobacteria (81.82%)
11 9851 bp 71.60 0.67 90.66
A1-16-all-fractions_k255_2415751
Class: Actinobacteria (90.91%)
11 12568 bp 72.15 0.64 88.73
A1-16-all-fractions_k255_89448
Class: Actinobacteria (90.91%)
11 11133 bp 68.05 0.53 91.89
A1-16-all-fractions_k255_1429337
Class: Actinobacteria (63.64%)
11 9700 bp 69.41 0.60 91.39
A1-16-all-fractions_k255_3715608
Class: Actinobacteria (90.91%)
11 9010 bp 70.71 0.47 93.13
A1-16-all-fractions_k255_169786
Class: Actinobacteria (63.64%)
11 10087 bp 70.69 0.67 93.21
A1-16-all-fractions_k255_2624824
Order: Streptosporangiales (63.64%)
11 10461 bp 69.20 0.65 84.43
A1-16-all-fractions_k255_4973188
Class: Actinobacteria (72.73%)
11 9354 bp 70.76 0.74 92.69
A1-16-all-fractions_k255_5028179
Class: Actinobacteria (63.64%)
11 9913 bp 71.22 0.45 95.33
A1-16-all-fractions_k255_1675284
Class: Actinobacteria (54.55%)
11 10411 bp 69.35 0.46 87.48
A1-16-all-fractions_k255_2766445
Class: Actinobacteria (72.73%)
11 14238 bp 72.07 0.76 91.59
A1-16-all-fractions_k255_1681666
Class: Actinobacteria (72.73%)
11 9331 bp 69.08 0.48 92.56
A1-16-all-fractions_k255_3952467
Class: Actinobacteria (90.91%)
11 14727 bp 71.60 0.63 87.53
A1-16-all-fractions_k255_1854607
Class: Actinobacteria (81.82%)
11 9332 bp 72.31 0.39 93.07
A1-16-all-fractions_k255_1868206
Class: Actinobacteria (63.64%)
11 13001 bp 70.26 0.55 88.63
A1-16-all-fractions_k255_4125580
Order: Streptosporangiales (54.55%)
11 6726 bp 68.81 0.78 85.46
A1-16-all-fractions_k255_2043637
Order: Streptosporangiales (50%)
10 12116 bp 70.74 1.03 85.52
A1-16-all-fractions_k255_945781
Order: Streptosporangiales (50%)
10 11076 bp 70.26 0.39 86.38
A1-16-all-fractions_k255_2154640
Class: Actinobacteria (90%)
10 8438 bp 71.47 0.50 93.26
A1-16-all-fractions_k255_4408401
Class: Actinobacteria (60%)
10 7369 bp 71.04 0.69 78.49
A1-16-all-fractions_k255_3323255
Order: Streptosporangiales (60%)
10 9579 bp 72.11 0.56 88.10
A1-16-all-fractions_k255_2214974
Class: Actinobacteria (90%)
10 9711 bp 72.02 0.62 93.85
A1-16-all-fractions_k255_4557751
Order: Streptosporangiales (70%)
10 9344 bp 71.75 0.43 90.73
A1-16-all-fractions_k255_1156461
Genus: Streptomyces (50%)
10 13733 bp 70.14 0.60 91.03
A1-16-all-fractions_k255_4596241
Class: Actinobacteria (80%)
10 9167 bp 71.34 0.54 94.77
A1-16-all-fractions_k255_3437184
Class: Actinobacteria (70%)
10 13426 bp 69.48 0.45 84.19
A1-16-all-fractions_k255_3445457
Class: Actinobacteria (80%)
10 12278 bp 70.09 0.59 84.88
A1-16-all-fractions_k255_4627888
Domain: Bacteria (60%)
10 12878 bp 71.25 0.62 92.53
A1-16-all-fractions_k255_2503113
Class: Actinobacteria (80%)
10 7768 bp 72.13 1.22 94.66
A1-16-all-fractions_k255_2506874
Class: Actinobacteria (80%)
10 8658 bp 70.80 0.54 91.68
Displaying items 51-100 of 1126 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.