ggKbase home page
Advanced Search
Search Help

A1-16-all-fractions_metab_12

wsip-metawrap-drep-bins_Actinobacteria_71_1
In projects: wsip-metawrap-drep-bins  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: wsip-metawrap-drep-bins_UNK

Properties

Avg. coverage: 0.66 Longest contig: 21.82 Kbp Bin length: 5.34 Mbp GC content: 70.72 %
Contigs count: 1126 Features count: 5687 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 38 / 55 MC: 8 BSCG 37 / 51 MC: 13 ASCG 10 / 38 MC: 1
Displaying items 301-350 of 1126 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
A1-16-all-fractions_k255_3391567
Class: Actinobacteria (66.67%)
6 2759 bp 72.09 0.43 82.96
A1-16-all-fractions_k255_3407703
Genus: Streptomyces (50%)
6 6380 bp 72.96 0.40 92.21
A1-16-all-fractions_k255_4603402
Class: Actinobacteria (66.67%)
6 3792 bp 70.73 0.59 76.58
A1-16-all-fractions_k255_3452978
Class: Actinobacteria (83.33%)
6 4970 bp 71.37 0.33 87.28
A1-16-all-fractions_k255_1189482
Order: Streptosporangiales (50%)
6 6029 bp 70.91 0.47 93.15
A1-16-all-fractions_k255_4626687
Class: Actinobacteria (66.67%)
6 4337 bp 67.77 0.59 89.37
A1-16-all-fractions_k255_1212903
Class: Actinobacteria (66.67%)
6 7094 bp 71.62 0.68 95.36
A1-16-all-fractions_k255_1229291
Class: Actinobacteria (66.67%)
6 6916 bp 73.15 0.48 95.86
A1-16-all-fractions_k255_1244804
Class: Actinobacteria (66.67%)
6 3704 bp 70.09 0.65 92.09
A1-16-all-fractions_k255_4692896
Class: Actinobacteria (66.67%)
6 4678 bp 72.53 0.51 92.03
A1-16-all-fractions_k255_1281121
Genus: Streptomyces (66.67%)
6 5639 bp 71.98 0.32 96.99
A1-16-all-fractions_k255_2455732
Class: Actinobacteria (83.33%)
6 3965 bp 70.32 0.61 87.62
A1-16-all-fractions_k255_3555599
Order: Streptosporangiales (50%)
6 6312 bp 69.79 0.33 90.45
A1-16-all-fractions_k255_7356
Order: Streptosporangiales (66.67%)
6 6218 bp 70.68 0.51 86.17
A1-16-all-fractions_k255_4725185
Order: Streptosporangiales (66.67%)
6 4365 bp 70.31 0.55 87.77
A1-16-all-fractions_k255_2479220
Class: Actinobacteria (50%)
6 5306 bp 72.13 0.45 92.10
A1-16-all-fractions_k255_2487645
Phylum: Actinobacteria (50%)
6 5100 bp 70.47 0.32 84.06
A1-16-all-fractions_k255_1360634
Order: Streptosporangiales (50%)
6 5953 bp 71.53 1.54 90.56
A1-16-all-fractions_k255_67599
Genus: Streptomyces (50%)
6 5582 bp 69.47 0.38 93.14
A1-16-all-fractions_k255_1388490
Class: Actinobacteria (66.67%)
6 3057 bp 68.04 1.08 76.45
A1-16-all-fractions_k255_1389002
Class: Actinobacteria (66.67%)
6 4676 bp 70.44 0.55 83.21
A1-16-all-fractions_k255_4824787
Class: Actinobacteria (100%)
6 5215 bp 71.14 0.63 93.25
A1-16-all-fractions_k255_3648353
Species: Thermomonospora curvata (50%)
6 6122 bp 73.60 0.96 82.47
A1-16-all-fractions_k255_3687841
Order: Streptosporangiales (50%)
6 8293 bp 72.13 0.49 93.80
A1-16-all-fractions_k255_1439495
Species: Catenulispora acidiphila (50%)
6 6953 bp 69.80 0.67 89.06
A1-16-all-fractions_k255_1446151
Genus: Streptomyces (50%)
6 6496 bp 73.35 0.58 89.46
A1-16-all-fractions_k255_1481380
Class: Actinobacteria (50%)
6 3818 bp 73.42 0.35 93.19
A1-16-all-fractions_k255_3722509
Genus: Streptomyces (50%)
6 5700 bp 70.05 1.13 93.26
A1-16-all-fractions_k255_1489407
Order: Streptosporangiales (50%)
6 3177 bp 68.37 0.99 91.88
A1-16-all-fractions_k255_1492086
Order: Streptomycetales (50%)
6 4016 bp 71.19 0.30 92.63
A1-16-all-fractions_k255_4926726
Order: Micrococcales (66.67%)
6 3494 bp 71.64 0.39 93.42
A1-16-all-fractions_k255_211074
Class: Actinobacteria (66.67%)
6 2645 bp 67.98 0.17 67.26
A1-16-all-fractions_k255_1496775
Class: Actinobacteria (83.33%)
6 5866 bp 69.98 0.59 89.04
A1-16-all-fractions_k255_3758454
Phylum: Actinobacteria (50%)
6 4857 bp 72.06 0.31 93.89
A1-16-all-fractions_k255_2670356
Genus: Streptomyces (66.67%)
6 5160 bp 72.48 0.70 87.21
A1-16-all-fractions_k255_3773618 6 6094 bp 73.24 0.39 85.85
A1-16-all-fractions_k255_248916
Order: Streptosporangiales (66.67%)
6 4263 bp 68.03 0.49 88.11
A1-16-all-fractions_k255_1535155
Class: Actinobacteria (83.33%)
6 3479 bp 70.48 0.52 87.35
A1-16-all-fractions_k255_286717
Class: Actinobacteria (83.33%)
6 5599 bp 71.46 0.54 91.89
A1-16-all-fractions_k255_293042
Genus: Streptomyces (50%)
6 6619 bp 72.17 0.25 95.50
A1-16-all-fractions_k255_3808664
Species: Thermomonospora curvata (66.67%)
6 5937 bp 68.64 2.85 92.72
A1-16-all-fractions_k255_3813010
Genus: Streptomyces (66.67%)
6 8422 bp 72.50 0.37 91.37
A1-16-all-fractions_k255_294994
Class: Actinobacteria (50%)
6 3149 bp 71.29 0.57 84.22
A1-16-all-fractions_k255_295101
Order: Streptosporangiales (50%)
6 7865 bp 70.82 0.55 82.01
A1-16-all-fractions_k255_2736074
Order: Streptosporangiales (66.67%)
6 5617 bp 68.72 0.40 88.82
A1-16-all-fractions_k255_3843899
Class: Actinobacteria (83.33%)
6 6690 bp 71.69 0.31 90.22
A1-16-all-fractions_k255_2742858
Class: Actinobacteria (66.67%)
6 4829 bp 72.04 0.34 90.33
A1-16-all-fractions_k255_1637695
Class: Actinobacteria (100%)
6 4744 bp 69.88 1.36 91.44
A1-16-all-fractions_k255_5025647
Class: Actinobacteria (66.67%)
6 8913 bp 69.02 0.52 85.90
A1-16-all-fractions_k255_2756841
Class: Actinobacteria (100%)
6 7552 bp 73.38 0.85 98.44
Displaying items 301-350 of 1126 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.