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A1-18-all-fractions_k255_2816678

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_2816678_1

Not on your lists

2..661
DNA (660bp) protein (220aa)
Sigma-54 interaction domain protein {ECO:0000313|EMBL:AIA14519.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Sigma-54 dependent DNA-binding response regulator id=3145103 bin=GWA1_Deltaproteobacteria_52_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
sigma-54 dependent DNA-binding response regulator
A1-18-all-fractions_k255_2816678_2
unknown

Not on your lists

1212..1367
DNA (156bp) protein (52aa)

This feature has no annotations

A1-18-all-fractions_k255_2816678_3

Not on your lists

comp(1391..2701)
DNA (1311bp) protein (437aa)
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Glutamate dehydrogenase id=2185137 bin=GWA2__Bacteriovorax-rel_49_15 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
gdhA; glutamate dehydrogenase
A1-18-all-fractions_k255_2816678_4
RIFOXYD1_FULL_Bdellovibrionales_53_11_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

2828..4000
DNA (1173bp) protein (391aa)
ddlA; D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase A id=3145118 bin=GWA1_Deltaproteobacteria_52_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
Tax=RIFOXYD1_FULL_Bdellovibrionales_53_11_curated
A1-18-all-fractions_k255_2816678_5
RIFOXYD1_FULL_Bdellovibrionales_53_11_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(4065..5054)
DNA (990bp) protein (330aa)
HNH endonuclease id=3652154 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
HNH endonuclease
Tax=RIFOXYD1_FULL_Bdellovibrionales_53_11_curated
A1-18-all-fractions_k255_2816678_6
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(5201..5842)
DNA (642bp) protein (214aa)
RNA polymerase sigma factor id=2881733 bin=GWA1_Deltaproteobacteria_52_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
RNA polymerase sigma factor, sigma-70 family
Tax=GWA1_Bdellovibrionales_52_35_curated
A1-18-all-fractions_k255_2816678_7
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

5998..6738
DNA (741bp) protein (247aa)
id=3859866 bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
A1-18-all-fractions_k255_2816678_8
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

6920..7687
DNA (768bp) protein (256aa)
id=3859866 bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
A1-18-all-fractions_k255_2816678_9
unknown

Not on your lists

comp(7700..8059)
DNA (360bp) protein (120aa)

This feature has no annotations

A1-18-all-fractions_k255_2816678_10
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(8093..10516)
DNA (2424bp) protein (808aa)
DNA topoisomerase id=3298519 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
topA; putative DNA protecting protein DprA/DNA topoisomerase I
Tax=GWB1_Bdellovibrionales_55_8_curated
A1-18-all-fractions_k255_2816678_11
unknown

Not on your lists

comp(10755..11798)
DNA (1044bp) protein (348aa)

This feature has no annotations

A1-18-all-fractions_k255_2816678_12
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(11910..12959)
DNA (1050bp) protein (350aa)
DNA processing protein DprA, putative id=3145304 bin=GWA1_Deltaproteobacteria_52_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
DNA processing protein DprA
Tax=GWA1_Bdellovibrionales_52_35_curated
A1-18-all-fractions_k255_2816678_13
RIFOXYD1_FULL_Bdellovibrionales_53_11_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(13078..14988)
DNA (1911bp) protein (637aa)
Putative signal peptide protein containing LysM motif id=3145307 bin=GWA1_Deltaproteobacteria_52_35 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
signal peptide protein
Tax=RIFOXYD1_FULL_Bdellovibrionales_53_11_curated
A1-18-all-fractions_k255_2816678_14
RIFOXYD1_FULL_Bdellovibrionales_44_7_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(14985..15992)
DNA (1008bp) protein (336aa)
Putative TPR-domain containing protein id=3298516 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
TPR-domain containing protein
Tax=RIFOXYD1_FULL_Bdellovibrionales_44_7_curated
A1-18-all-fractions_k255_2816678_15
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

16055..16282
DNA (228bp) protein (76aa)
id=3145313 bin=GWA1_Deltaproteobacteria_52_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
A1-18-all-fractions_k255_2816678_16
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

16398..17471
DNA (1074bp) protein (358aa)
id=3145318 bin=GWA1_Deltaproteobacteria_52_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
A1-18-all-fractions_k255_2816678_17
RIFOXYD1_FULL_Bdellovibrionales_44_7_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(17655..18752)
DNA (1098bp) protein (366aa)
id=3178745 bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
Tax=RIFOXYD1_FULL_Bdellovibrionales_44_7_curated
A1-18-all-fractions_k255_2816678_18
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(18811..19773)
DNA (963bp) protein (321aa)
Flp (Type IV) pilus assembly protein, CpaF homolog id=3145321 bin=GWA1_Deltaproteobacteria_52_35 species=Thiomicrospira crunogena genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
type II secretion system protein E
Tax=GWA1_Bdellovibrionales_52_35_curated
A1-18-all-fractions_k255_2816678_19
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(19770..21248)
DNA (1479bp) protein (493aa)
Flp pilus assembly protein id=3145325 bin=GWA1_Deltaproteobacteria_52_35 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
outer membrane secretin family protein
Tax=GWA1_Bdellovibrionales_52_35_curated
A1-18-all-fractions_k255_2816678_20
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

21699..21824
DNA (126bp) protein (42aa)
id=3145329 bin=GWA1_Deltaproteobacteria_52_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
Tax=GWA1_Bdellovibrionales_52_35_curated
A1-18-all-fractions_k255_2816678_21
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

21856..23022
DNA (1167bp) protein (389aa)
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase id=3145330 bin=GWA1_Deltaproteobacteria_52_35 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
Tax=GWA1_Bdellovibrionales_52_35_curated
A1-18-all-fractions_k255_2816678_22
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

23139..23360
DNA (222bp) protein (74aa)
id=3145333 bin=GWA1_Deltaproteobacteria_52_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
Tax=GWA1_Bdellovibrionales_52_35_curated
A1-18-all-fractions_k255_2816678_23

Not on your lists

comp(23376..24167)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Joostella marina DSM 19592 RepID=I3C835_9FLAO
membrane metalloprotease
Uncharacterized protein {ECO:0000313|EMBL:KKO07957.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
A1-18-all-fractions_k255_2816678_24
unknown

Not on your lists

24362..24523
DNA (162bp) protein (54aa)

This feature has no annotations

A1-18-all-fractions_k255_2816678_25
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

24523..25644
DNA (1122bp) protein (374aa)
Response regulator of hydrogenase 3 activity (Sensor HydH) id=3145335 bin=GWA1_Deltaproteobacteria_52_35 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
Fis family transcriptional regulator
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
A1-18-all-fractions_k255_2816678_26
unknown

Not on your lists

25790..27406
DNA (1617bp) protein (539aa)

This feature has no annotations

A1-18-all-fractions_k255_2816678_27
R_Bdellovibrionales_40_15, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(27486..28220)
DNA (735bp) protein (245aa)
Tax=RIFCSPHIGHO2_02_FULL_Bdellovibrionales_40_15_curated
A1-18-all-fractions_k255_2816678_28
unknown

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comp(28220..28738)
DNA (519bp) protein (173aa)

This feature has no annotations

A1-18-all-fractions_k255_2816678_29
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28858..29289
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPY3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KJV37388.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
hypothetical protein
A1-18-all-fractions_k255_2816678_30
RIFOXYD1_FULL_Bdellovibrionales_55_31_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(29318..30133)
DNA (816bp) protein (272aa)
ABC transporter substrate binding protein id=3298403 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
ABC transporter substrate binding protein
Tax=RIFOXYD1_FULL_Bdellovibrionales_55_31_curated
Displaying items 1-30 of 85 in total

View Taxonomy