ggKbase home page

A1-18-all-fractions_k255_1512535

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_1512535_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..705
DNA (705bp) protein (235aa)
Glycosyl transferase group 1 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD80_9SPHN
Glycosyltransferase {ECO:0000313|EMBL:GAO57010.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
glycosyltransferase
A1-18-all-fractions_k255_1512535_2
unknown

Not on your lists

748..1710
DNA (963bp) protein (321aa)

This feature has no annotations

A1-18-all-fractions_k255_1512535_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1743..2588
DNA (846bp) protein (282aa)
beta-lactamase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002894C86
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AJP71071.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
A1-18-all-fractions_k255_1512535_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2585..3298
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZK8_9SPHN
DNA, contig: SP630 {ECO:0000313|EMBL:GAN13878.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
A1-18-all-fractions_k255_1512535_5
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3295..4335
DNA (1041bp) protein (347aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
quinolinate synthetase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488A38
quinolinate synthetase
A1-18-all-fractions_k255_1512535_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4522..4836
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003804428
Sphingomonas taxi strain 30a NODE_31, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26472.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
A1-18-all-fractions_k255_1512535_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4859..5587
DNA (729bp) protein (243aa)
TonB-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WDW5_9SPHN
TonB-like protein {ECO:0000313|EMBL:ENY81651.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
TonB-like protein
A1-18-all-fractions_k255_1512535_8
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5707..6135)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VD30_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ70196.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
A1-18-all-fractions_k255_1512535_9
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6135..7592)
DNA (1458bp) protein (486aa)
Extracellular solute-binding protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8H6_9SPHN
extracellular solute-binding protein
Extracellular solute-binding protein {ECO:0000313|EMBL:AGH50824.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_1512535_10
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7690..9660
DNA (1971bp) protein (657aa)
Penicillin-binding protein 1A family n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RWC2_9SPHN
Putative penicillin-binding protein {ECO:0000313|EMBL:GAO38554.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
penicillin-binding protein 1A family
A1-18-all-fractions_k255_1512535_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9852..10013
DNA (162bp) protein (54aa)
pilus assembly protein n=1 Tax=Sphingomonas elodea RepID=UPI000263213B
pilus assembly protein
Component of type 4 pilus pilin subunit protein {ECO:0000313|EMBL:EZP72932.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
A1-18-all-fractions_k255_1512535_12
unknown

Not on your lists

10143..10463
DNA (321bp) protein (107aa)

This feature has no annotations

A1-18-all-fractions_k255_1512535_13
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10577..12601
DNA (2025bp) protein (675aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VDE7_SPHWW
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:ABQ70313.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
A1-18-all-fractions_k255_1512535_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12724..13479)
DNA (756bp) protein (252aa)
Histidine kinase,PAS domain-containing protein,Response regulator receiver domain protein,histidine kinase,GAF domain-containing protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YRG7_9RHIZ
Histidine kinase,PAS domain-containing protein,Response regulator receiver domain protein,histidine kinase,GAF domain-containing protein {ECO:0000313|EMBL:EIM26559.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
histidine kinase
A1-18-all-fractions_k255_1512535_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13698..14720
DNA (1023bp) protein (341aa)
Proline-specific peptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3X0_9GAMM
proline iminopeptidase
Proline iminopeptidase {ECO:0000313|EMBL:AHX12515.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
A1-18-all-fractions_k255_1512535_16
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14929..15249)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488A4C
Uncharacterized protein {ECO:0000313|EMBL:GAM02222.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
A1-18-all-fractions_k255_1512535_17
Zymomonas mobilis, Zymomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15329..16036
DNA (708bp) protein (236aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=579138 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas.;" source="Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 /; NBRC 13757 / NCIMB 11200 / NRRL B-4491).;"
cytidylate kinase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3E01E
cytidylate kinase
A1-18-all-fractions_k255_1512535_18
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16047..17693
DNA (1647bp) protein (549aa)
diguanylate cyclase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB92B
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:AGH47900.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_1512535_19
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17723..18376)
DNA (654bp) protein (218aa)
SCP-like extracellular n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RXD3_9SPHN
SCP-like extracellular
SCP-like extracellular {ECO:0000313|EMBL:AGH48385.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_1512535_20
Geobacter sp. M18, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18324..18872)
DNA (549bp) protein (183aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WN89_GEOS8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADW13841.1}; TaxID=443143 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M18).;"
A1-18-all-fractions_k255_1512535_21
unknown

Not on your lists

comp(18891..18983)
DNA (93bp) protein (31aa)

This feature has no annotations

A1-18-all-fractions_k255_1512535_22
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19264..19986
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036FFD1F
Uncharacterized protein {ECO:0000313|EMBL:EZP56767.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
A1-18-all-fractions_k255_1512535_23
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19983..20501)
DNA (519bp) protein (173aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087942}; EC=1.11.1.15 {ECO:0000256|HAMAP-Rule:MF_01676, ECO:0000256|SAAS:SAAS00087930};; Alkylhydroperoxidase AhpD {ECO:0000256|HAMAP-Rule:MF_01676}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
alkyl hydroperoxide reductase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488576
alkylhydroperoxidase
A1-18-all-fractions_k255_1512535_24
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20628..21173)
DNA (546bp) protein (182aa)
Alkyl hydroperoxide reductase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SBL6_9SPHN
Alkyl hydroperoxide reductase AhpC {ECO:0000313|EMBL:GAO39297.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
alkyl hydroperoxide reductase
A1-18-all-fractions_k255_1512535_25
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21298..22257
DNA (960bp) protein (320aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RZG1_9SPHN
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AGH48043.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_1512535_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22277..24541)
DNA (2265bp) protein (755aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Catalase-peroxidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ57_9SPHN
katG; catalase/peroxidase
A1-18-all-fractions_k255_1512535_27
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24860..25426)
DNA (567bp) protein (189aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:KGB54264.1}; EC=2.7.8.5 {ECO:0000313|EMBL:KGB54264.1};; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003751FFA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
A1-18-all-fractions_k255_1512535_28
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25519..26796
DNA (1278bp) protein (426aa)
MFS transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489BAB
Putative major facilitator superfamily transporter {ECO:0000313|EMBL:GAO39302.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
putative MFS permease
A1-18-all-fractions_k255_1512535_29
unknown

Not on your lists

comp(26803..26973)
DNA (171bp) protein (57aa)

This feature has no annotations

A1-18-all-fractions_k255_1512535_30
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27078..28736)
DNA (1659bp) protein (553aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RW15_9SPHN
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:AGH47900.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Displaying items 1-30 of 55 in total

View Taxonomy