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A1-18-all-fractions_k255_3741407

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Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_3741407_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..496
DNA (495bp) protein (165aa)
phage-shock protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036B696F
Phage shock protein A {ECO:0000313|EMBL:GAL99840.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
pspA; phage shock protein A
A1-18-all-fractions_k255_3741407_2
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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500..769
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002E4D1F1
phage-shock protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
A1-18-all-fractions_k255_3741407_3
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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759..1232
DNA (474bp) protein (158aa)
Phage shock protein C, PspC n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RXA9_9SPHN
phage shock protein C, PspC
Phage shock protein C, PspC {ECO:0000313|EMBL:AGH48360.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_3741407_4
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1256..1555
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium RepID=F6IKT6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK92622.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
A1-18-all-fractions_k255_3741407_5
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1606..1911
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQB3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH44288.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
A1-18-all-fractions_k255_3741407_6
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1973..2251
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W6K7_9SPHN
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
A1-18-all-fractions_k255_3741407_7
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2248..2496
DNA (249bp) protein (83aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037AC8A5
Uncharacterized protein {ECO:0000313|EMBL:EQB30984.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
A1-18-all-fractions_k255_3741407_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2515..2934
DNA (420bp) protein (140aa)
Fe-S metabolism associated SufE n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UY47_9SPHN
Fe-S metabolism associated SufE {ECO:0000313|EMBL:ENY83139.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Fe-S metabolism associated SufE
A1-18-all-fractions_k255_3741407_9
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2931..3470)
DNA (540bp) protein (180aa)
molecular chaperone DnaJ n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00037F5F1A
Uncharacterized protein {ECO:0000313|EMBL:GAO37993.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
molecular chaperone DnaJ
A1-18-all-fractions_k255_3741407_10

Not on your lists

comp(3975..4661)
DNA (687bp) protein (229aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB940
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:AIA16480.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
N-acetylmuramoyl-L-alanine amidase
A1-18-all-fractions_k255_3741407_11
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4694..5569)
DNA (876bp) protein (292aa)
chemotaxis protein CheR n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6B82C
Uncharacterized protein {ECO:0000313|EMBL:KHK92887.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
CheR-type MCP methyltransferase
A1-18-all-fractions_k255_3741407_12
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5560..6669)
DNA (1110bp) protein (370aa)
Protein-glutamate methylesterase {ECO:0000256|SAAS:SAAS00070601}; EC=3.1.1.61 {ECO:0000256|SAAS:SAAS00070601};; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJJ9_9SPHN
response regulator receiver modulated CheB methylesterase
A1-18-all-fractions_k255_3741407_13
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6680..7045)
DNA (366bp) protein (122aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas elodea RepID=UPI0002631E09
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ABQ66440.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
A1-18-all-fractions_k255_3741407_14
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7104..7544)
DNA (441bp) protein (147aa)
CheW protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SCT9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK92889.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
CheW protein
A1-18-all-fractions_k255_3741407_15
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7541..9880)
DNA (2340bp) protein (780aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
CheA signal transduction histidine kinase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0K3_9SPHN
CheA signal transduction histidine kinase
A1-18-all-fractions_k255_3741407_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9939..10577)
DNA (639bp) protein (213aa)
histidine phosphotransferase n=1 Tax=Sphingomonas elodea RepID=UPI00026305CC
histidine phosphotransferase
Histidine phosphotransferase {ECO:0000313|EMBL:AJP71974.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
A1-18-all-fractions_k255_3741407_17
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10590..11615
DNA (1026bp) protein (342aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
Pseudouridine synthase n=1 Tax=Sphingomonas sp. S17 RepID=F3WV38_9SPHN
pseudouridine synthase
A1-18-all-fractions_k255_3741407_18
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11681..12589
DNA (909bp) protein (303aa)
RNA polymerase sigma 70 n=1 Tax=Sphingomonas elodea RepID=UPI00026305D3
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
rpoH; RNA polymerase sigma-32 factor
A1-18-all-fractions_k255_3741407_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12735..13784)
DNA (1050bp) protein (350aa)
ribonuclease n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288E48C
ribonuclease
Ribonuclease {ECO:0000313|EMBL:AIT06596.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
A1-18-all-fractions_k255_3741407_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13802..15109)
DNA (1308bp) protein (436aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003799FD0
ribonuclease
Ribonuclease {ECO:0000313|EMBL:AIT06596.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
A1-18-all-fractions_k255_3741407_21
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15265..17292
DNA (2028bp) protein (676aa)
Elongation factor G n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RZY3_9SPHN
Elongation factor G {ECO:0000313|EMBL:GAO40798.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
elongation factor G
A1-18-all-fractions_k255_3741407_22
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17485..18786
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00035E549A
Scaffold5, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32248.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
membrane protein involved in the export of O-antigen and teichoic acid
A1-18-all-fractions_k255_3741407_23
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18845..19696)
DNA (852bp) protein (284aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=beta proteobacterium L13 RepID=UPI000370D14B
2-dehydro-3-deoxyphosphooctonate aldolase
A1-18-all-fractions_k255_3741407_24
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19706..20509)
DNA (804bp) protein (268aa)
HAD superfamily protein involved in N-acetyl-glucosamine catabolism n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R6C9_9RHIZ
HAD-superfamily hydrolase
HAD superfamily protein involved in N-acetyl-glucosamine catabolism {ECO:0000313|EMBL:ESR27492.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
A1-18-all-fractions_k255_3741407_25
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20506..21303)
DNA (798bp) protein (266aa)
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J1N1_9SPHN
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000313|EMBL:EQB18045.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
A1-18-all-fractions_k255_3741407_26
BJP_IG2158_Rhodobacterales_69_12, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21300..22277)
DNA (978bp) protein (326aa)
Arabinose 5-phosphate isomerase (EC:5.3.1.13)
Arabinose 5-phosphate isomerase n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QCF3_9RHOB
Tax=BJP_IG2158_Rhodobacterales_69_12
A1-18-all-fractions_k255_3741407_27
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22365..23678
DNA (1314bp) protein (438aa)
Sodium:dicarboxylate symporter n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SBM1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE54526.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
sodium:dicarboxylate symporter
A1-18-all-fractions_k255_3741407_28
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23707..24957)
DNA (1251bp) protein (417aa)
Dipeptidase n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TLN3_9PROT
Dipeptidase {ECO:0000313|EMBL:EMD82621.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
Twin-arginine translocation pathway signal
A1-18-all-fractions_k255_3741407_29
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25030..26304
DNA (1275bp) protein (425aa)
Bcr/CflA subfamily drug resistance transporter n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RZH2_9SPHN
Bcr/CflA subfamily drug resistance transporter
Bcr/CflA subfamily drug resistance transporter {ECO:0000313|EMBL:AGH49140.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_3741407_30
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists


comp(26370..27452)
DNA (1083bp) protein (361aa)
Protein RecA n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8N8_9SPHN
recA; recombinase A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
Displaying items 1-30 of 48 in total

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