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A1-18-all-fractions_k255_3795574

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_3795574_1
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..340
DNA (339bp) protein (113aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
ABC transporter n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000372CF8E
ABC transporter ATP-binding protein
A1-18-all-fractions_k255_3795574_2
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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376..1290
DNA (915bp) protein (305aa)
Uncharacterized protein putative lipoprotein-like protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QHP3_BRESC
Uncharacterized protein {ECO:0000313|EMBL:GAO40922.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
A1-18-all-fractions_k255_3795574_3
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1421..4807
DNA (3387bp) protein (1129aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
DNA polymerase III subunit alpha n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S7I6_9SPHN
DNA polymerase III subunit alpha
A1-18-all-fractions_k255_3795574_4
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4809..5474)
DNA (666bp) protein (222aa)
hemerythrin n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002EC378E
Uncharacterized protein {ECO:0000313|EMBL:GAO37960.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
A1-18-all-fractions_k255_3795574_5
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5571..6476)
DNA (906bp) protein (302aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766};; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Sphingomonas sp. S17 RepID=F3WV52_9SPHN
monofunctional biosynthetic peptidoglycan transglycosylase
A1-18-all-fractions_k255_3795574_6
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6664..9321
DNA (2658bp) protein (886aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
alaS; alanyl-tRNA ligase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SD23_9SPHN
A1-18-all-fractions_k255_3795574_7
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9318..9755
DNA (438bp) protein (146aa)
Glutathione-dependent formaldehyde-activating protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S3A4_9SPHN
glutathione-dependent formaldehyde-activating protein
Glutathione-dependent formaldehyde-activating protein {ECO:0000313|EMBL:AGH50495.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
A1-18-all-fractions_k255_3795574_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9813..11582)
DNA (1770bp) protein (590aa)
sodium/hydrogen exchanger n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD176
sodium:proton exchanger
Sodium:proton exchanger {ECO:0000313|EMBL:AJP71602.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
A1-18-all-fractions_k255_3795574_9
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11691..12938
DNA (1248bp) protein (416aa)
monooxygenase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A88ECA
Putative oxidoreductase {ECO:0000313|EMBL:GAO38494.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
A1-18-all-fractions_k255_3795574_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12957..14189)
DNA (1233bp) protein (411aa)
Isocitrate dehydrogenase [NADP]; Short=IDH;; EC=1.1.1.42;; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
Isocitrate dehydrogenase [NADP] n=2 Tax=Sphingobium yanoikuyae RepID=IDH_SPHYA
icd; isocitrate dehydrogenase
A1-18-all-fractions_k255_3795574_11
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14294..15034
DNA (741bp) protein (247aa)
phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0Y8_9SPHN
A1-18-all-fractions_k255_3795574_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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15031..15798
DNA (768bp) protein (256aa)
CDP-alcohol phosphatidyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WHM4_9SPHN
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:ENY82971.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
CDP-alcohol phosphatidyltransferase
A1-18-all-fractions_k255_3795574_13
unknown

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comp(15761..15982)
DNA (222bp) protein (74aa)

This feature has no annotations

A1-18-all-fractions_k255_3795574_14
Erythrobacter litoralis, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16189..16944
DNA (756bp) protein (252aa)
30S ribosomal protein S2 n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B31373
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
rpsB; 30S ribosomal protein S2
A1-18-all-fractions_k255_3795574_15
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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17029..17973
DNA (945bp) protein (315aa)
Elongation factor Ts n=1 Tax=Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 / NBRC 13757 / NCIMB 11200 / NRRL B-4491) RepID=F8ETN6_ZYMMT
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
translation elongation factor Ts
A1-18-all-fractions_k255_3795574_16
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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18133..18855
DNA (723bp) protein (241aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJT2_9SPHN
A1-18-all-fractions_k255_3795574_17
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18859..19419
DNA (561bp) protein (187aa)
Ribosome-recycling factor n=1 Tax=Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 / NBRC 13757 / NCIMB 11200 / NRRL B-4491) RepID=F8ETN8_ZYMMT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
ribosome recycling factor
A1-18-all-fractions_k255_3795574_18

Not on your lists

19416..20165
DNA (750bp) protein (250aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00035F4DE4
Putative undecaprenyl diphosphate synthase {ECO:0000313|EMBL:AGU10500.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
A1-18-all-fractions_k255_3795574_19
Zymomonas mobilis, Zymomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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20162..20794
DNA (633bp) protein (211aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=579138 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas.;" source="Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 /; NBRC 13757 / NCIMB 11200 / NRRL B-4491).;"
Phosphatidate cytidylyltransferase n=1 Tax=Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 / NBRC 13757 / NCIMB 11200 / NRRL B-4491) RepID=F8ETP0_ZYMMT
phosphatidate cytidylyltransferase
A1-18-all-fractions_k255_3795574_20
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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20791..21951
DNA (1161bp) protein (387aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A3F605
A1-18-all-fractions_k255_3795574_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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21955..22176
DNA (222bp) protein (74aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
RIP metalloprotease RseP n=1 Tax=Sphingomonas sp. S17 RepID=F3WVN4_9SPHN
peptidase
Displaying 21 items

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