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A1-18-all-fractions_k255_12719

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_12719_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..646
DNA (645bp) protein (215aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FCA259
truB; tRNA pseudouridine synthase B
A1-18-all-fractions_k255_12719_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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870..1139
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Rhodovulum sp. PH10 RepID=J9DWH3_9RHOB
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
30S ribosomal protein S15
A1-18-all-fractions_k255_12719_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1389..3566
DNA (2178bp) protein (726aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SVL4_9BRAD
A1-18-all-fractions_k255_12719_4
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3699..4538)
DNA (840bp) protein (280aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
enoyl-(acyl carrier protein) reductase (EC:1.3.1.10)
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WS43_9BRAD
A1-18-all-fractions_k255_12719_5
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4605..5822)
DNA (1218bp) protein (406aa)
3-oxoacyl-[acyl-carrier-protein] synthase, KASI n=1 Tax=Rhodovulum sp. PH10 RepID=J5PFG5_9RHOB
3-oxoacyl-[acyl-carrier-protein] synthase, KASI {ECO:0000313|EMBL:EJW10322.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
3-oxoacyl-ACP synthase
A1-18-all-fractions_k255_12719_6
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5872..6438)
DNA (567bp) protein (189aa)
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA {ECO:0000256|HAMAP-Rule:MF_00405}; Beta-hydroxydecanoyl thioester dehydrase {ECO:0000256|HAMAP-Rule:MF_00405}; Trans-2-decenoyl-[acyl-carrier-protein] isomerase {ECO:0000256|HAMAP-Rule:MF_00405}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HZY3_AZOC5
fabA; 3-hydroxydecanoyl-ACP dehydratase
A1-18-all-fractions_k255_12719_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6586..7128
DNA (543bp) protein (181aa)
Iron-responsive regulator Irr n=1 Tax=Rhodovulum sp. PH10 RepID=J6IZB2_9RHOB
Iron-responsive regulator Irr {ECO:0000313|EMBL:EJW10325.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
ferric uptake regulator family protein
A1-18-all-fractions_k255_12719_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7190..7603)
DNA (414bp) protein (138aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21CF8_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD85928.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
A1-18-all-fractions_k255_12719_9
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7947..8948
DNA (1002bp) protein (334aa)
Glyoxylate reductase {ECO:0000313|EMBL:ABS69348.1}; EC=1.1.1.26 {ECO:0000313|EMBL:ABS69348.1};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Glyoxylate reductase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IMV5_XANP2
glyoxylate reductase
A1-18-all-fractions_k255_12719_10
unknown

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9044..9394
DNA (351bp) protein (117aa)

This feature has no annotations

A1-18-all-fractions_k255_12719_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9474..10274)
DNA (801bp) protein (267aa)
Molybdopterin biosynthesis protein MoeB n=1 Tax=Rhodovulum sp. PH10 RepID=J6UGD6_9RHOB
Molybdopterin biosynthesis protein MoeB {ECO:0000313|EMBL:EJW12911.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
molybdenum cofactor biosynthesis protein
A1-18-all-fractions_k255_12719_12
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10454..11227)
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:KAI93893.1}; EC=4.2.1.17 {ECO:0000313|EMBL:KAI93893.1};; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
Enoyl-CoA hydratase n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3B826_STRMB
enoyl-CoA hydratase/isomerase
A1-18-all-fractions_k255_12719_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11347..12228)
DNA (882bp) protein (294aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
mutM; formamidopyrimidine-DNA glycosylase (EC:3.2.2.23 4.2.99.18)
Formamidopyrimidine-DNA glycosylase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0F0_9BRAD
A1-18-all-fractions_k255_12719_14
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12303..13097
DNA (795bp) protein (265aa)
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Rhodovulum sp. PH10 RepID=J9DT47_9RHOB
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase
A1-18-all-fractions_k255_12719_15
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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13094..14668
DNA (1575bp) protein (525aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
ubiB; 2-polyprenylphenol 6-hydroxylase (EC:1.14.13.-)
Ubiquinone biosynthesis monooxygenase UbiB n=1 Tax=Rhodovulum sp. PH10 RepID=J9A1H7_9RHOB
A1-18-all-fractions_k255_12719_16
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14728..16185
DNA (1458bp) protein (486aa)
Phosphopantothenate synthase {ECO:0000313|EMBL:ETR77666.1}; EC=4.1.1.36 {ECO:0000313|EMBL:ETR77666.1};; EC=6.3.2.5 {ECO:0000313|EMBL:ETR77666.1};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=UPI0001A230F6
coaBC; bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
A1-18-all-fractions_k255_12719_17
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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16182..16658
DNA (477bp) protein (159aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IYH0_POLGS
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
A1-18-all-fractions_k255_12719_18
unknown

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16692..16805
DNA (114bp) protein (38aa)

This feature has no annotations

Displaying 18 items

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