ggKbase home page

A1-18-all-fractions_k255_1725605

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_1725605_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..228
DNA (228bp) protein (76aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CZK9_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS21988.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
A1-18-all-fractions_k255_1725605_2
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(268..624)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E8Y9_BRASB
Uncharacterized protein {ECO:0000313|EMBL:ETR77937.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
A1-18-all-fractions_k255_1725605_3
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

839..2065
DNA (1227bp) protein (409aa)
Oxidoreductase molybdopterin binding protein SorA n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GN55_CUPNN
sorA; oxidoreductase molybdopterin binding protein SorA
Oxidoreductase molybdopterin binding protein SorA {ECO:0000313|EMBL:AEI80243.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
A1-18-all-fractions_k255_1725605_4
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2077..2358
DNA (282bp) protein (94aa)
Putative sulfite:cytochrome c oxidoreductase subunit B n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IVR4_METNO
putative sulfite:cytochrome c oxidoreductase subunit B
Putative sulfite:cytochrome c oxidoreductase subunit B {ECO:0000313|EMBL:ACL62504.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
A1-18-all-fractions_k255_1725605_5
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2487..3521
DNA (1035bp) protein (345aa)
asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121, ECO:0000313|EMBL:CAL74309.1};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4YK83_BRASO
A1-18-all-fractions_k255_1725605_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3564..4337)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8L8_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH90552.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
A1-18-all-fractions_k255_1725605_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4436..5299
DNA (864bp) protein (288aa)
L-malyl-CoA/beta-methylmalyl-CoA lyase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PTE2_9RHOB
L-malyl-CoA/beta-methylmalyl-CoA lyase {ECO:0000313|EMBL:EJW13117.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
HpcH/HpaI aldolase/citrate lyase family protein
A1-18-all-fractions_k255_1725605_8
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5356..5676
DNA (321bp) protein (107aa)
UPI0003D6A3D2 related cluster n=1 Tax=unknown RepID=UPI0003D6A3D2
antibiotic biosynthesis monooxygenase
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:AHC99622.1}; TaxID=999552 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
A1-18-all-fractions_k255_1725605_9
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5890..6495)
DNA (606bp) protein (202aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QKU0_9BRAD
leuD; 3-isopropylmalate dehydratase small subunit
A1-18-all-fractions_k255_1725605_10
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6592..7020)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TWL6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE10854.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
A1-18-all-fractions_k255_1725605_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7147..7506
DNA (360bp) protein (120aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21CT3_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD85803.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
A1-18-all-fractions_k255_1725605_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7516..8916)
DNA (1401bp) protein (467aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
leuC; 3-isopropylmalate dehydratase large subunit LeuC (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Rhodovulum sp. PH10 RepID=J6IX94_9RHOB
A1-18-all-fractions_k255_1725605_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9066..9590
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PGU0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37593.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
A1-18-all-fractions_k255_1725605_14
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9666..10073)
DNA (408bp) protein (136aa)
50S ribosomal protein L19 n=1 Tax=Afipia sp. 1NLS2 RepID=D6V150_9BRAD
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
rplS; 50S ribosomal protein L19
A1-18-all-fractions_k255_1725605_15
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10166..10915)
DNA (750bp) protein (250aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DFE7_BRAJP
tRNA (guanine-N1)-methyltransferase
A1-18-all-fractions_k255_1725605_16
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10944..11471)
DNA (528bp) protein (176aa)
Ribosome maturation factor RimM n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=RIMM_BRASO
rimM; 16S rRNA-processing protein RimM
Ribosome maturation factor RimM {ECO:0000255|HAMAP-Rule:MF_00014}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
A1-18-all-fractions_k255_1725605_17
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11496..11876)
DNA (381bp) protein (127aa)
30S ribosomal protein S16 n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DFE5_BRAJP
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
A1-18-all-fractions_k255_1725605_18
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11929..13488)
DNA (1560bp) protein (520aa)
Signal recognition particle protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6L8V0_9RHOB
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
ffh; signal recognition particle protein Ffh
A1-18-all-fractions_k255_1725605_19
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13809..14549
DNA (741bp) protein (247aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3F6_9BRAD
Permease {ECO:0000313|EMBL:ETR78550.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
conserved hypothetical protein
A1-18-all-fractions_k255_1725605_20
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14630..15085
DNA (456bp) protein (152aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D3J8_MYXXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF88010.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
A1-18-all-fractions_k255_1725605_21
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15197..15913)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H9B5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC45036.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
transcriptional regulator of kdp operon
A1-18-all-fractions_k255_1725605_22
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15906..17429)
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IFT3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIF65789.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
kdpD; osmosensitive K+ channel signal transduction histidine kinase (two-component system with KdpE)
A1-18-all-fractions_k255_1725605_23
unknown

Not on your lists

17666..18100
DNA (435bp) protein (145aa)

This feature has no annotations

A1-18-all-fractions_k255_1725605_24
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

18437..19474
DNA (1038bp) protein (346aa)
ABC-type uncharacterized transport system, periplasmic component id=4775522 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
A1-18-all-fractions_k255_1725605_25
Methylophaga nitratireducenticrescens, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19560..19958)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI0002F7CE74
sensor histidine kinase with a response regulator receiver domain
Methylophaga nitratireducenticrescens strain JAM1, complete genome {ECO:0000313|EMBL:AFI84819.1}; TaxID=754476 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM; 25689 / JAM1).;"
A1-18-all-fractions_k255_1725605_26
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20036..20503)
DNA (468bp) protein (156aa)
Putative two-component transcriptional regulator, LuxR family n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0U047_9BRAD
Putative two-component transcriptional regulator, LuxR family {ECO:0000313|EMBL:CCE12085.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
two component LuxR family transcriptional regulator
A1-18-all-fractions_k255_1725605_27
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21167..23728)
DNA (2562bp) protein (854aa)
ATPase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000373B2E8
multi-sensor hybrid histidine kinase
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ENO78065.1}; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
A1-18-all-fractions_k255_1725605_28
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24149..24703)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Burkholderia cepacia GG4 RepID=J7JGQ2_BURCE
Uncharacterized protein {ECO:0000313|EMBL:AHY49942.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein
A1-18-all-fractions_k255_1725605_29
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25080..25823
DNA (744bp) protein (248aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein id=14626394 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
A1-18-all-fractions_k255_1725605_30
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25820..26494
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QF26_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC62745.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
Displaying items 1-30 of 33 in total

View Taxonomy