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A1-18-all-fractions_k255_1804931

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_1804931_1
bacterium YEK0313, Bacteria

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comp(1..123)
DNA (123bp) protein (41aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UHR6_9RHOB
hypothetical protein
A1-18-all-fractions_k255_1804931_2
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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563..1522
DNA (960bp) protein (320aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=DCUP_BRADU
A1-18-all-fractions_k255_1804931_3
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1548..1970
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z071_9BRAD
conserved membrane hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86229.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
A1-18-all-fractions_k255_1804931_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2201..3466
DNA (1266bp) protein (422aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Transcription termination factor Rho n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WSB8_9BRAD
rho; transcription termination factor Rho
A1-18-all-fractions_k255_1804931_5
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3467..5503)
DNA (2037bp) protein (679aa)
Thymidylate kinase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UHR3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ETR77789.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
A1-18-all-fractions_k255_1804931_6
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5642..6997
DNA (1356bp) protein (452aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
tRNA modification GTPase MnmE n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1F2_9BRAD
trmE; tRNA modification GTPase TrmE
A1-18-all-fractions_k255_1804931_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7210..9090
DNA (1881bp) protein (627aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Rhodovulum sp. PH10 RepID=J5PT70_9RHOB
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
A1-18-all-fractions_k255_1804931_8
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9090..9833
DNA (744bp) protein (248aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
gidB; 16S rRNA methyltransferase GidB (EC:2.1.-.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SQJ2_9BRAD
A1-18-all-fractions_k255_1804931_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9882..10817
DNA (936bp) protein (312aa)
Chromosome segregation ATPase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07UN9_RHOP5
cobyrinic acid a,c-diamide synthase
Chromosome segregation ATPase {ECO:0000313|EMBL:ABJ04345.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
A1-18-all-fractions_k255_1804931_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10844..11716
DNA (873bp) protein (291aa)
ParB-like partition protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VI81_RHOPX
parB-like partition protein
ParB-like partition protein {ECO:0000313|EMBL:ADU41977.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
A1-18-all-fractions_k255_1804931_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11735..12757)
DNA (1023bp) protein (341aa)
DNA polymerase III, delta subunit n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NWH5_9BRAD
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EKS34682.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
holA; DNA polymerase III subunit delta
A1-18-all-fractions_k255_1804931_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12860..13477)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6JB01_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW12645.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
A1-18-all-fractions_k255_1804931_13
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13464..16088)
DNA (2625bp) protein (875aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UGV3_9RHOB
A1-18-all-fractions_k255_1804931_14
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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16402..17484
DNA (1083bp) protein (361aa)
Regulatory protein ada {ECO:0000313|EMBL:CCF85840.1}; EC=2.1.1.63 {ECO:0000313|EMBL:CCF85840.1};; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
Regulatory protein ada n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EMC7_9CHLR
O-6-methylguanine DNA methyltransferase
A1-18-all-fractions_k255_1804931_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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17481..18239
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DCM6_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA26992.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
A1-18-all-fractions_k255_1804931_16
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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18293..19003
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6JAY1_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW12635.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
A1-18-all-fractions_k255_1804931_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19000..19533)
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00036BC04A
ErfK/YbiS/YcfS/YnhG family protein
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:ADU41984.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
A1-18-all-fractions_k255_1804931_18
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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19663..20349
DNA (687bp) protein (229aa)
DNA-binding response regulator n=1 Tax=Rhodovulum sp. PH10 RepID=J6LIF5_9RHOB
DNA-binding response regulator {ECO:0000313|EMBL:EJW12633.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
two component transcriptional regulator
A1-18-all-fractions_k255_1804931_19
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20359..20817
DNA (459bp) protein (153aa)
cyclic nucleotide-binding protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DB596F
Bradyrhizobium elkanii strain UASWS1015 Contig171, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50124.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
cyclic nucleotide-binding domain-containing protein
A1-18-all-fractions_k255_1804931_20
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20854..21669)
DNA (816bp) protein (272aa)
exodeoxyribonuclease III (EC:3.1.11.2)
exodeoxyribonuclease III n=1 Tax=Afipia birgiae RepID=UPI0002ECF389
Exodeoxyribonuclease III {ECO:0000313|EMBL:ETR77804.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
A1-18-all-fractions_k255_1804931_21
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(21852..22667)
DNA (816bp) protein (272aa)
Outer membrane lipoprotein carrier protein LolA n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21CN4_RHOPB
outer membrane lipoprotein carrier protein LolA
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
A1-18-all-fractions_k255_1804931_22
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22765..25194)
DNA (2430bp) protein (810aa)
DNA translocase ftsK n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H3R2_9BRAD
DNA translocase ftsK {ECO:0000313|EMBL:ERF84422.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
DNA translocase
A1-18-all-fractions_k255_1804931_23
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25202..26419)
DNA (1218bp) protein (406aa)
D-alanine transaminase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HHW3_9BRAD
Diaminopimelate aminotransferase {ECO:0000313|EMBL:ETR77807.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
class I and II aminotransferase
A1-18-all-fractions_k255_1804931_24
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26597..28033)
DNA (1437bp) protein (479aa)
ammonia channel protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000374EFAC
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
ammonium transporter
A1-18-all-fractions_k255_1804931_25
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(28073..28411)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein PII n=3 Tax=Rhizobiales RepID=H5YCT2_9BRAD
Nitrogen regulatory protein PII {ECO:0000313|EMBL:EHQ99735.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
nitrogen regulatory protein P-II 1
Displaying 25 items

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