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A1-18-all-fractions_k255_2716957

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A1-18-all-fractions_k255_2716957_1
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..639)
DNA (639bp) protein (213aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
truB; tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B n=1 Tax=Rhodovulum sp. PH10 RepID=J9DD30_9RHOB
A1-18-all-fractions_k255_2716957_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(636..1058)
DNA (423bp) protein (141aa)
ribosome-binding factor A n=1 Tax=Afipia birgiae RepID=UPI00030229DD
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
rbfA; ribosome-binding factor A
A1-18-all-fractions_k255_2716957_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1159..3729)
DNA (2571bp) protein (857aa)
Translation initiation factor IF-2 n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WT45_9BRAD
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
infB; translation initiation factor IF-2
A1-18-all-fractions_k255_2716957_4
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3762..4445)
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SWQ0_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA03291.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
A1-18-all-fractions_k255_2716957_5
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4455..6065)
DNA (1611bp) protein (537aa)
transcription elongation factor NusA n=1 Tax=Bradyrhizobium japonicum RepID=UPI000378C894
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
nusA; transcription elongation factor NusA
A1-18-all-fractions_k255_2716957_6
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6069..6770)
DNA (702bp) protein (234aa)
ribosome maturation factor RimP n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003674F4F
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
A1-18-all-fractions_k255_2716957_7
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6992..7723)
DNA (732bp) protein (244aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
trmB; tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TKG5_9BRAD
A1-18-all-fractions_k255_2716957_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7771..9045)
DNA (1275bp) protein (425aa)
S-adenosylmethionine synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=METK_PARL1
S-adenosylmethionine synthetase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
A1-18-all-fractions_k255_2716957_9
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9201..9611)
DNA (411bp) protein (137aa)
Transcriptional regulator, XRE family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WT40_9BRAD
Transcriptional regulator, XRE family protein {ECO:0000313|EMBL:EAQ37174.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
XRE family transcriptional regulator
A1-18-all-fractions_k255_2716957_10
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9830..11518)
DNA (1689bp) protein (563aa)
Apolipoprotein N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148}; Short=ALP N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_01148};; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_01148};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
Apolipoprotein N-acyltransferase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P424_9BRAD
lnt; apolipoprotein N-acyltransferase
A1-18-all-fractions_k255_2716957_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11515..12666)
DNA (1152bp) protein (384aa)
Magnesium and cobalt efflux protein CorC n=1 Tax=Rhodovulum sp. PH10 RepID=J6UBV3_9RHOB
Magnesium and cobalt efflux protein CorC {ECO:0000313|EMBL:EJW10721.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
magnesium and cobalt efflux protein
A1-18-all-fractions_k255_2716957_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12672..13193)
DNA (522bp) protein (174aa)
Endoribonuclease YbeY {ECO:0000255|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00009};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Endoribonuclease YbeY n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=YBEY_RHOP5
hypothetical protein
A1-18-all-fractions_k255_2716957_13
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13241..14293)
DNA (1053bp) protein (351aa)
Phosphate starvation-inducible ATPase PhoH with RNA binding motif n=1 Tax=Rhodovulum sp. PH10 RepID=J6UCX3_9RHOB
Phosphate starvation protein PhoH {ECO:0000313|EMBL:ETR77993.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
phosphate starvation-inducible protein, PhoH-like protein
A1-18-all-fractions_k255_2716957_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14298..15683)
DNA (1386bp) protein (462aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VG92_RHOPX
RNA modification protein, MiaB family
A1-18-all-fractions_k255_2716957_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15828..16817)
DNA (990bp) protein (330aa)
Uncharacterized protein n=3 Tax=Bordetella holmesii RepID=M5NRZ4_9BORD
Tricarboxylate transport protein TctC
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
A1-18-all-fractions_k255_2716957_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16839..17273)
DNA (435bp) protein (145aa)
Ferric uptake regulation protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HJG0_9BRAD
Ferric uptake regulation protein {ECO:0000313|EMBL:ERF84576.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Fur family ferric uptake regulator
A1-18-all-fractions_k255_2716957_17
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17373..17849)
DNA (477bp) protein (159aa)
rimI; ribosomal-protein-alanine acetyltransferase (EC:2.3.1.128)
Ribosomal-protein-alanine acetyltransferase n=2 Tax=Oligotropha carboxidovorans RepID=B6JCT8_OLICO
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:AEI04748.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
A1-18-all-fractions_k255_2716957_18
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17846..18526)
DNA (681bp) protein (227aa)
Putative molecular chaperone n=1 Tax=Rhodovulum sp. PH10 RepID=J6J101_9RHOB
Putative molecular chaperone {ECO:0000313|EMBL:EJW10715.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
peptidase M22 glycoprotease
A1-18-all-fractions_k255_2716957_19
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18631..19194)
DNA (564bp) protein (188aa)
iron transporter n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003771ADE
NifU protein
Putative nifU protein (C-terminal) {ECO:0000313|EMBL:CAL74007.1}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
A1-18-all-fractions_k255_2716957_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19368..19862)
DNA (495bp) protein (165aa)
UspA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS80_NITHX
hypothetical protein
UspA {ECO:0000313|EMBL:ABE60917.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
A1-18-all-fractions_k255_2716957_21
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20021..21067)
DNA (1047bp) protein (349aa)
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Tryptophan--tRNA ligase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E847_BRASB
A1-18-all-fractions_k255_2716957_22
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21252..22253
DNA (1002bp) protein (334aa)
Fructokinase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PHG9_9RHOB
Fructokinase {ECO:0000313|EMBL:EJW10707.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
PfkB protein
A1-18-all-fractions_k255_2716957_23
unknown

Not on your lists

22304..22996
DNA (693bp) protein (231aa)

This feature has no annotations

A1-18-all-fractions_k255_2716957_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22993..24159)
DNA (1167bp) protein (389aa)
gamma-glutamyl kinase (EC:2.7.2.11)
Glutamate 5-kinase {ECO:0000255|HAMAP-Rule:MF_00456}; EC=2.7.2.11 {ECO:0000255|HAMAP-Rule:MF_00456};; Gamma-glutamyl kinase {ECO:0000255|HAMAP-Rule:MF_00456}; Short=GK {ECO:0000255|HAMAP-Rule:MF_00456};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Glutamate 5-kinase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=PROB_RHOP2
A1-18-all-fractions_k255_2716957_25
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24218..25018
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6JDH8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW13125.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
A1-18-all-fractions_k255_2716957_26
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24993..26027)
DNA (1035bp) protein (345aa)
GTPase Obg n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=OBG_RHOP5
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
obgE; GTPase ObgE
A1-18-all-fractions_k255_2716957_27
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26482..27090)
DNA (609bp) protein (203aa)
50S ribosomal protein acetyltransferase n=1 Tax=Rhodovulum sp. PH10 RepID=J6JDG9_9RHOB
50S ribosomal protein acetyltransferase {ECO:0000313|EMBL:EJW13120.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
N-acetyltransferase
A1-18-all-fractions_k255_2716957_28
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27206..27478)
DNA (273bp) protein (91aa)
50S ribosomal protein L27 n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=RL27_OCHA4
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000313|EMBL:EXL04130.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
A1-18-all-fractions_k255_2716957_29
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27541..28059)
DNA (519bp) protein (173aa)
50S ribosomal protein L21 n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HTQ7_9RHIZ
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
LSU ribosomal protein L21p
A1-18-all-fractions_k255_2716957_30
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28366..29244
DNA (879bp) protein (293aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
dapF; diaminopimelate epimerase (EC:5.1.1.7)
diaminopimelate epimerase n=1 Tax=Afipia birgiae RepID=UPI0002EA1604
Displaying items 1-30 of 91 in total

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