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A3-16-all-fractions_k255_3489227

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Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-16-all-fractions_k255_3489227_1
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3..203)
DNA (201bp) protein (67aa)
Ribosomal protein S2 n=1 Tax=uncultured organism RepID=T1W579_9ZZZZ
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
rpsB; ribosomal protein S2
A3-16-all-fractions_k255_3489227_2
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

480..1304
DNA (825bp) protein (275aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
map; methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PCP2_9BURK
A3-16-all-fractions_k255_3489227_3
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1379..3967
DNA (2589bp) protein (863aa)
glnD; protein-P-II uridylyltransferase (EC:2.7.7.59)
PII uridylyl-transferase n=1 Tax=Massilia niastensis RepID=UPI000372AD5F
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
A3-16-all-fractions_k255_3489227_4
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4050..4796
DNA (747bp) protein (249aa)
rsuA; RNA pseudouridylate synthase (EC:4.2.1.70)
Pseudouridine synthase n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DTD6_9BURK
Pseudouridylate synthase {ECO:0000313|EMBL:KGF83151.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
A3-16-all-fractions_k255_3489227_5
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4888..5208)
DNA (321bp) protein (107aa)
Uncharacterized protein {ECO:0000313|EMBL:KGF83150.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
A3-16-all-fractions_k255_3489227_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5360..8719)
DNA (3360bp) protein (1120aa)
Chemotaxis protein methyltransferase CheR {ECO:0000313|EMBL:CCU64024.1}; EC=2.1.1.80 {ECO:0000313|EMBL:CCU64024.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Chemotaxis protein methyltransferase CheR n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLX0_9PROT
multi-sensor hybrid histidine kinase
A3-16-all-fractions_k255_3489227_7
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9268..10773
DNA (1506bp) protein (502aa)
amino acid transporter n=1 Tax=Massilia niastensis RepID=UPI000368E912
Amino acid/peptide transporter (Peptide:H+ symporter) {ECO:0000313|EMBL:KFC75831.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
amino acid/peptide transporter
A3-16-all-fractions_k255_3489227_8
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10783..11004)
DNA (222bp) protein (74aa)
PAS domain-containing protein n=1 Tax=Schlesneria paludicola RepID=UPI000299CF32
PAS/PAC sensor hybrid histidine kinase
Autoinducer 2 sensor kinase/phosphatase LuxQ {ECO:0000313|EMBL:GAO05007.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
A3-16-all-fractions_k255_3489227_9
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11330..14200
DNA (2871bp) protein (957aa)
PAS:GGDEF protein n=2 Tax=Pseudomonas syringae RepID=L7FTB9_PSESX
Uncharacterized protein {ECO:0000313|EMBL:KGF83148.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
PAS:GGDEF
A3-16-all-fractions_k255_3489227_10
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14279..15475
DNA (1197bp) protein (399aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DF96_9BURK
Aminotransferase {ECO:0000313|EMBL:KGF83147.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
class I and II aminotransferase
A3-16-all-fractions_k255_3489227_11
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15477..16832)
DNA (1356bp) protein (452aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00036D1E6F
Uncharacterized protein {ECO:0000313|EMBL:KGF83146.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
two-component hybrid sensor and regulator
A3-16-all-fractions_k255_3489227_12
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16842..18302)
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DB82_9BURK
Protein kinase {ECO:0000313|EMBL:KGF83145.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
protein kinase
A3-16-all-fractions_k255_3489227_13
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18299..18721)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DCI5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU81923.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
A3-16-all-fractions_k255_3489227_14
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18888..20687
DNA (1800bp) protein (600aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000376AFCB
Uncharacterized protein {ECO:0000313|EMBL:KGF83143.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
conserved hypothetical protein
A3-16-all-fractions_k255_3489227_15
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20679..21167)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI000380632D
Uncharacterized protein {ECO:0000313|EMBL:KGF83142.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
putative uncharacterized protein
A3-16-all-fractions_k255_3489227_16
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21164..21700)
DNA (537bp) protein (179aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
Peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DXF9_9BURK
A3-16-all-fractions_k255_3489227_17
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21697..22587)
DNA (891bp) protein (297aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
galU; UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Massilia niastensis RepID=UPI00036FC0B1
A3-16-all-fractions_k255_3489227_18
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22600..24981)
DNA (2382bp) protein (794aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
ligA; DNA ligase, NAD-dependent (EC:6.5.1.2)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00036829DD
A3-16-all-fractions_k255_3489227_19
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24989..26200)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00035E8CD2
Cell division protein ZipA {ECO:0000256|RuleBase:RU003612}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
zipA; cell division protein zipA
A3-16-all-fractions_k255_3489227_20
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26197..29721)
DNA (3525bp) protein (1175aa)
chromosome partitioning protein Smc n=1 Tax=Massilia niastensis RepID=UPI00037F6180
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
smc; chromosome segregation protein SMC
A3-16-all-fractions_k255_3489227_21
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29815..30498)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PCQ4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KGF83136.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
PAP2 superfamily protein
A3-16-all-fractions_k255_3489227_22
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30577..33153)
DNA (2577bp) protein (859aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PBZ9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KGF83135.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hypothetical protein
A3-16-all-fractions_k255_3489227_23
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33545..33760
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI0003673FC5
Uncharacterized protein {ECO:0000313|EMBL:KGF83134.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hypothetical protein
A3-16-all-fractions_k255_3489227_24
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33896..34453)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI00036448A7
Peptidase S14 {ECO:0000313|EMBL:KGF83133.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
clp protease family protein
A3-16-all-fractions_k255_3489227_25
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34883..36007
DNA (1125bp) protein (375aa)
Aminomethyltransferase {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|HAMAP-Rule:MF_00259, ECO:0000256|RuleBase:RU003981};; Glycine cleavage system T protein {ECO:0000256|HAMAP-Rule:MF_00259}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
gcvT; glycine cleavage system T protein (EC:2.1.2.10)
glycine cleavage system protein T n=1 Tax=Massilia niastensis RepID=UPI000368B50D
A3-16-all-fractions_k255_3489227_26
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36054..36434
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI0003602A2E
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
gcvH; glycine cleavage system H protein
A3-16-all-fractions_k255_3489227_27
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36551..39436
DNA (2886bp) protein (962aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
gcvP; glycine dehydrogenase (EC:1.4.4.2)
glycine dehydrogenase n=1 Tax=Massilia niastensis RepID=UPI00036D9EEA
A3-16-all-fractions_k255_3489227_28
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39458..41083)
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DB69_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU81909.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
HAMP domain protein
A3-16-all-fractions_k255_3489227_29
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41311..41637
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Janthinobacterium lividum RepID=UPI0002886171
Uncharacterized protein {ECO:0000313|EMBL:KGF83129.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hypothetical protein
A3-16-all-fractions_k255_3489227_30
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41741..43408)
DNA (1668bp) protein (556aa)
peptide chain release factor 3 n=1 Tax=Massilia niastensis RepID=UPI000360F501
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
prfC; peptide chain release factor 3
Displaying items 1-30 of 41 in total

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