ggKbase home page

A3-16-all-fractions_k255_2503291

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-16-all-fractions_k255_2503291_1
unknown

Not on your lists

115..369
DNA (255bp) protein (85aa)

This feature has no annotations

A3-16-all-fractions_k255_2503291_2
unknown

Not on your lists

comp(619..891)
DNA (273bp) protein (91aa)

This feature has no annotations

A3-16-all-fractions_k255_2503291_3
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1084..4494
DNA (3411bp) protein (1137aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00036CE816
Uncharacterized protein {ECO:0000313|EMBL:CCH76142.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
peptide ABC transporter substrate-binding protein
A3-16-all-fractions_k255_2503291_4
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4578..5810)
DNA (1233bp) protein (411aa)
RNA polymerase sigma factor SigA n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JWG5_SACES
rpoD; RNA polymerase sigma factor rpoD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
A3-16-all-fractions_k255_2503291_5
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6000..6764)
DNA (765bp) protein (255aa)
Polyphosphate glucokinase (EC:2.7.1.63)
polyphosphate glucokinase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B745B8
Polyphosphate glucokinase {ECO:0000313|EMBL:EFL06455.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
A3-16-all-fractions_k255_2503291_6
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6856..7677
DNA (822bp) protein (274aa)
inositol-phosphate phosphatase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B516AB
inositol-phosphate phosphatase
Inositol-phosphate phosphatase {ECO:0000313|EMBL:AGL20207.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
A3-16-all-fractions_k255_2503291_7
Streptomyces mutabilis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7697..8254)
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5217F
hypothetical protein
Membrane protein {ECO:0000313|EMBL:KFG72268.1}; TaxID=67332 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mutabilis.;"
A3-16-all-fractions_k255_2503291_8
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8546..8854
DNA (309bp) protein (103aa)
dUTPase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B4F5EB
dUTPase
Uncharacterized protein {ECO:0000313|EMBL:EWC61731.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
A3-16-all-fractions_k255_2503291_9
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8937..9710)
DNA (774bp) protein (258aa)
Dehydrogenase/reductase SDR family member 4 {ECO:0000313|EMBL:CCI54780.1}; EC=1.1.1.184 {ECO:0000313|EMBL:CCI54780.1};; TaxID=1193518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
hypothetical protein n=1 Tax=Demetria terragena RepID=UPI00036937E4
short-chain dehydrogenase/reductase SDR
A3-16-all-fractions_k255_2503291_10
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9734..10174)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Micromonospora sp. CNB394 RepID=UPI000374F5F4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL45154.1}; TaxID=644283 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
A3-16-all-fractions_k255_2503291_11
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10293..10742
DNA (450bp) protein (150aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE72F
A3-16-all-fractions_k255_2503291_12
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10743..11375
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B71D2D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH89328.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
A3-16-all-fractions_k255_2503291_13
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11392..11760
DNA (369bp) protein (123aa)
Nucleic acid binding OB-fold tRNA/helicase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4F113_MODMB
nucleic acid binding OB-fold tRNA/helicase
Nucleic acid binding OB-fold tRNA/helicase {ECO:0000313|EMBL:CCH89326.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
A3-16-all-fractions_k255_2503291_14
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11757..12437
DNA (681bp) protein (227aa)
membrane protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B37D07
High-affinity Fe2+/Pb2+ permease {ECO:0000313|EMBL:EHY88061.1}; TaxID=882081 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea NA-128.;"
hypothetical protein
A3-16-all-fractions_k255_2503291_15
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12411..13070)
DNA (660bp) protein (220aa)
potassium transporter TrkA n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B5D108
TrkA-N domain-containing protein
TrkA-N domain protein {ECO:0000313|EMBL:ACV80055.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
A3-16-all-fractions_k255_2503291_16
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13067..13732)
DNA (666bp) protein (222aa)
potassium transporter TrkA n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B663A5
trkA; Trk system potassium uptake protein trkA
Trk system potassium uptake protein trkA {ECO:0000313|EMBL:CCG04157.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
A3-16-all-fractions_k255_2503291_17
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13900..15948
DNA (2049bp) protein (683aa)
Membrane protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RBJ9_9ACTO
Membrane protein {ECO:0000313|EMBL:EEP69762.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
ydaO; amino acid permease
A3-16-all-fractions_k255_2503291_18
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15960..17891)
DNA (1932bp) protein (644aa)
Diguanylate cyclase/phosphodiesterase (Modular protein) n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4F3Z3_MODMB
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase (Modular protein) {ECO:0000313|EMBL:CCH90356.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
A3-16-all-fractions_k255_2503291_19
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18051..19373
DNA (1323bp) protein (441aa)
Deoxyribonuclease/rho motif-related TRAM n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3IZ29_FRASU
deoxyribonuclease/rho motif-related TRAM
Deoxyribonuclease/rho motif-related TRAM {ECO:0000313|EMBL:ADP80312.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
A3-16-all-fractions_k255_2503291_20
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19392..21332
DNA (1941bp) protein (647aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B72BF4
deoxyxylulose-5-phosphate synthase
A3-16-all-fractions_k255_2503291_21
Saccharomonospora cyanea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21345..22046
DNA (702bp) protein (234aa)
transcriptional regulator n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B78F15
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EHR62079.1}; Flags: Precursor;; TaxID=882082 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora cyanea NA-134.;"
response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein
A3-16-all-fractions_k255_2503291_22
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22076..23236
DNA (1161bp) protein (387aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
ATPase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B30940
putative histidine kinase
A3-16-all-fractions_k255_2503291_23
Saccharothrix sp. ST-888, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23256..24140)
DNA (885bp) protein (295aa)
acid phosphatase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B7850F
Acid phosphatase {ECO:0000313|EMBL:KJK57827.1}; TaxID=1427391 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix sp. ST-888.;"
acid phosphatase
A3-16-all-fractions_k255_2503291_24
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24238..25443)
DNA (1206bp) protein (402aa)
3''''-5'''' exonuclease n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B6B5EA
3'-5' exonuclease {ECO:0000313|EMBL:KEI45928.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
3'-5' exonuclease
A3-16-all-fractions_k255_2503291_25
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25547..26146)
DNA (600bp) protein (200aa)
membrane protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B45184
Putative uncharacterized protein {ECO:0000313|EMBL:EEP74171.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
hypothetical protein
A3-16-all-fractions_k255_2503291_26
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26143..26349)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B6H1_FRADG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH09268.1}; TaxID=656024 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
A3-16-all-fractions_k255_2503291_27
Kineosphaera limosa, Kineosphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26412..27491
DNA (1080bp) protein (360aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=1184609 species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Kineosphaera.;" source="Kineosphaera limosa NBRC 100340.;"
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Kineosphaera limosa NBRC 100340 RepID=K6W6D4_9MICO
Displaying 27 items

View Taxonomy