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A3-16-all-fractions_k255_3815023

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-16-all-fractions_k255_3815023_1
unknown

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comp(2..73)
DNA (72bp) protein (24aa)

This feature has no annotations

A3-16-all-fractions_k255_3815023_2
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(135..398)
DNA (264bp) protein (88aa)
Phosphoribosyl-ATP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071052}; Short=PRA-PH {ECO:0000256|HAMAP-Rule:MF_01020};; EC=3.6.1.31 {ECO:0000256|HAMAP-Rule:MF_01020, ECO:0000256|SAAS:SAAS00071044};; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
phosphoribosyl-ATP pyrophosphatase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B68BCF
hypothetical protein
A3-16-all-fractions_k255_3815023_3
Amycolatopsis lurida, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(427..1476)
DNA (1050bp) protein (350aa)
Adenylate cyclase n=1 Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2YV22_9PSEU
adenylate cyclase
Adenylate cyclase {ECO:0000313|EMBL:AJK56412.1}; TaxID=1460371 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis lurida NRRL 2430.;"
A3-16-all-fractions_k255_3815023_4
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1480..1923)
DNA (444bp) protein (148aa)
Universal stress protein n=3 Tax=Amycolatopsis mediterranei RepID=D8HMB5_AMYMU
Universal stress protein {ECO:0000313|EMBL:KDN20214.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
universal stress protein
A3-16-all-fractions_k255_3815023_5
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1990..2469)
DNA (480bp) protein (160aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Serinicoccus profundi RepID=UPI000255E50E
A3-16-all-fractions_k255_3815023_6
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(2466..3695)
DNA (1230bp) protein (410aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B6FF1C
GTP cyclohydrolase II
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=526225 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
A3-16-all-fractions_k255_3815023_7
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(3692..4297)
DNA (606bp) protein (202aa)
riboflavin synthase subunit alpha n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B51F9E
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:EEP74574.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
riboflavin synthase eubacterial eukaryotic
A3-16-all-fractions_k255_3815023_8
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4305..5348)
DNA (1044bp) protein (348aa)
ribG; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:1.1.1.193 3.5.4.26)
Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase {ECO:0000313|EMBL:CAM01427.1}; EC=1.1.1.193 {ECO:0000313|EMBL:CAM01427.1};; EC=3.5.4.26 {ECO:0000313|EMBL:CAM01427.1};; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
DeoR family transcriptional regulator n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B63155
A3-16-all-fractions_k255_3815023_9
Mycobacterium rhodesiae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(5348..6004)
DNA (657bp) protein (219aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=931627 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rhodesiae JS60.;"
ribulose-phosphate 3-epimerase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B6791B
rpe; ribulose-phosphate 3-epimerase Rpe
A3-16-all-fractions_k255_3815023_10
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6075..7418)
DNA (1344bp) protein (448aa)
rRNA cytosine-C5-methyltransferase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B54383
Fmu (Sun) domain-containing protein
Fmu (Sun) domain protein {ECO:0000313|EMBL:ACU39044.1}; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
A3-16-all-fractions_k255_3815023_11
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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comp(7411..8337)
DNA (927bp) protein (309aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=469371 species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
methionyl-tRNA formyltransferase n=1 Tax=Streptomyces vitaminophilus RepID=UPI00035FC502
methionyl-tRNA formyltransferase
A3-16-all-fractions_k255_3815023_12
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8334..8876)
DNA (543bp) protein (181aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
peptide deformylase n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B69153
def; Peptide deformylase
A3-16-all-fractions_k255_3815023_13
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8995..10632
DNA (1638bp) protein (546aa)
MFS transporter n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B53CFE
Arabinose efflux permease family protein {ECO:0000313|EMBL:KJE19421.1}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
transmembrane efflux protein
Displaying 13 items

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