ggKbase home page

A3-16-all-fractions_k255_1563925

Search features with annotation key words

Displaying items 1-30 of 60 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-16-all-fractions_k255_1563925_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13..1299)
DNA (1287bp) protein (429aa)
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000256|RuleBase:RU003370}; EC=2.3.3.16 {ECO:0000256|RuleBase:RU003370};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Citrate synthase n=2 Tax=Azorhizobium caulinodans RepID=A8I4A9_AZOC5
gltA; citrate synthase
A3-16-all-fractions_k255_1563925_2
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1427..2878)
DNA (1452bp) protein (484aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Glutamate--tRNA ligase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8INI9_METNO
glutamyl-tRNA synthetase
A3-16-all-fractions_k255_1563925_3
unknown

Not on your lists

3699..3812
DNA (114bp) protein (38aa)
competence protein ComEC n=1 Tax=Methylocystis parvus RepID=UPI0002F16000
A3-16-all-fractions_k255_1563925_4
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3809..4111
DNA (303bp) protein (101aa)
ComEC/Rec2-related protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QSL6_METTR
ComEC/Rec2-like protein
ComEC/Rec2-related protein {ECO:0000313|EMBL:CCJ05485.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
A3-16-all-fractions_k255_1563925_5
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4175..5263
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036D0D28
ComEC/Rec2-like protein
ComEC/Rec2-related protein {ECO:0000313|EMBL:CCJ05485.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
A3-16-all-fractions_k255_1563925_6
unknown

Not on your lists

5338..5736
DNA (399bp) protein (133aa)

This feature has no annotations

A3-16-all-fractions_k255_1563925_7
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5772..6473)
DNA (702bp) protein (234aa)
LexA repressor (EC:3.4.21.88)
LexA repressor {ECO:0000255|HAMAP-Rule:MF_00015}; EC=3.4.21.88 {ECO:0000255|HAMAP-Rule:MF_00015};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
umuDC operon protein-like protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037B3F0C
A3-16-all-fractions_k255_1563925_8
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6725..7597
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003675BE3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB95419.1}; Flags: Precursor;; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
A3-16-all-fractions_k255_1563925_9
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7626..8465)
DNA (840bp) protein (280aa)
Iron permease FTR1 n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QJM7_METTR
iron permease FTR1
Iron permease FTR1 {ECO:0000313|EMBL:ACB93766.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
A3-16-all-fractions_k255_1563925_10
unknown

Not on your lists

comp(8537..8830)
DNA (294bp) protein (98aa)

This feature has no annotations

A3-16-all-fractions_k255_1563925_11
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9158..10465
DNA (1308bp) protein (436aa)
Homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579, ECO:0000313|EMBL:CCJ05552.1}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579, ECO:0000313|EMBL:CCJ05552.1};; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
homoserine dehydrogenase n=1 Tax=Methylosinus sp. LW4 RepID=UPI00035F7010
A3-16-all-fractions_k255_1563925_12
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10521..11540
DNA (1020bp) protein (340aa)
fructose 1,6-bisphosphatase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E19F20
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
glpX; fructose 1,6-bisphosphatase II
A3-16-all-fractions_k255_1563925_13
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11548..11928)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CRN1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN11244.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
MmgE/PrpD family protein
A3-16-all-fractions_k255_1563925_14
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12550..12894)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CRN1_9BRAD
MmgE/PrpD family protein {ECO:0000313|EMBL:KJC38235.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
2-methylcitrate dehydratase
A3-16-all-fractions_k255_1563925_15
unknown

Not on your lists

comp(12894..13040)
DNA (147bp) protein (49aa)

This feature has no annotations

A3-16-all-fractions_k255_1563925_16
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13117..13560
DNA (444bp) protein (148aa)
GCN5-related N-acetyltransferase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IKZ7_METNO
WecD protein {ECO:0000313|EMBL:BAQ46123.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
N-acetyltransferase GCN5
A3-16-all-fractions_k255_1563925_17
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13581..14174)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZJG9_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM86435.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
A3-16-all-fractions_k255_1563925_18
unknown

Not on your lists

14477..14920
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00037AEFBC
A3-16-all-fractions_k255_1563925_19
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14973..16148)
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003749AF9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK49258.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
A3-16-all-fractions_k255_1563925_20
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16271..16816
DNA (546bp) protein (182aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 88A RepID=UPI00038011B2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY33230.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
A3-16-all-fractions_k255_1563925_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16947..17276
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P237_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34754.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Alpha/beta hydrolase fold protein
A3-16-all-fractions_k255_1563925_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17230..18051
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031CA6DF
Uncharacterized protein {ECO:0000313|EMBL:EKS34754.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Alpha/beta hydrolase fold protein
A3-16-all-fractions_k255_1563925_23
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18082..19626
DNA (1545bp) protein (515aa)
Na+/H+ antiporter n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QFV1_9BRAD
Na+/H+ antiporter {ECO:0000313|EMBL:EGP09893.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
sodium:proton antiporter
A3-16-all-fractions_k255_1563925_24
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19904..20209
DNA (306bp) protein (102aa)
Methyltransferase type 11 n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T7C4_MESCW
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADV10529.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
A3-16-all-fractions_k255_1563925_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20160..20711
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000317797A
Uncharacterized protein {ECO:0000313|EMBL:EKS39572.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
type 11 methyltransferase
A3-16-all-fractions_k255_1563925_26
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20874..21482)
DNA (609bp) protein (203aa)
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
thiamine-phosphate synthase n=1 Tax=Methyloferula stellata RepID=UPI0003803313
A3-16-all-fractions_k255_1563925_27
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21484..22281)
DNA (798bp) protein (266aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Thiazole synthase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4N3_STAND
thiazole biosynthesis protein
A3-16-all-fractions_k255_1563925_28
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22283..22480)
DNA (198bp) protein (66aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00036FA70A
thiamine biosynthesis protein ThiS
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:ACB95785.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
A3-16-all-fractions_k255_1563925_29
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22449..23444)
DNA (996bp) protein (332aa)
FAD dependent oxidoreductase n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QQG5_METSZ
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:CCJ07728.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
A3-16-all-fractions_k255_1563925_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23733..24914
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEE8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36718.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
luciferase-like protein
Displaying items 1-30 of 60 in total

View Taxonomy
NameRatio
Rhizobiales
81.67%
unknown
13.33%
Rhodospirillales
3.33%
Thiotrichales
1.67%
Rhizobiales: 0.8166666666666667unknown: 0.13333333333333333Rhodospirillales: 0.03333333333333333Thiotrichales: 0.016666666666666666Rhizobialesunknown