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A3-16-all-fractions_k255_3834227

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-16-all-fractions_k255_3834227_1
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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43..411
DNA (369bp) protein (123aa)
hypothetical protein
hypothetical protein id=5079307 bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
A3-16-all-fractions_k255_3834227_2
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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514..816
DNA (303bp) protein (101aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQ79_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR73298.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
A3-16-all-fractions_k255_3834227_3
RLO_Burkholderiales_64_99, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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838..1533
DNA (696bp) protein (232aa)
phosphoglycerate mutase (EC:5.4.2.1)
phosphoglycerate mutase n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034888D3
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_99_curated
A3-16-all-fractions_k255_3834227_4
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1656..2645)
DNA (990bp) protein (330aa)
ruvB; holliday junction ATP-dependent DNA helicase RuvB (EC:3.6.4.12)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXM3_RUBGI
A3-16-all-fractions_k255_3834227_5
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2840..3262
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y1G4_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB34263.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
A3-16-all-fractions_k255_3834227_6
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3410..3982)
DNA (573bp) protein (191aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
Holliday junction DNA helicase RuvA n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034A2803
ruvA; Holliday junction DNA helicase RuvA
A3-16-all-fractions_k255_3834227_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4008..5105
DNA (1098bp) protein (366aa)
Phosphate starvation-inducible protein PhoH, predicted ATPase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQ66_9BURK
Phosphate starvation-inducible protein PhoH, predicted ATPase {ECO:0000313|EMBL:EHR73285.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
phoH-like protein
A3-16-all-fractions_k255_3834227_8
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5105..5557
DNA (453bp) protein (151aa)
Endoribonuclease YbeY {ECO:0000255|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00009};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
Endoribonuclease YbeY n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=YBEY_METPP
hypothetical protein
A3-16-all-fractions_k255_3834227_9
unknown

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5663..5881
DNA (219bp) protein (73aa)

This feature has no annotations

A3-16-all-fractions_k255_3834227_10
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5958..6422
DNA (465bp) protein (155aa)
Host attachment protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LU02_9BURK
Host attachment protein {ECO:0000313|EMBL:EGJ11820.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
hypothetical protein
A3-16-all-fractions_k255_3834227_11
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6456..7460)
DNA (1005bp) protein (335aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hemB; porphobilinogen synthase HemB (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQ63_9BURK
A3-16-all-fractions_k255_3834227_12
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7823..8260
DNA (438bp) protein (146aa)
Putative transmembrane protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SCI0_METPP
transmembrane protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
A3-16-all-fractions_k255_3834227_13
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8282..9451
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXL2_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL97749.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
A3-16-all-fractions_k255_3834227_14
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9512..9835
DNA (324bp) protein (108aa)
Ferredoxin-like protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LU74_9BURK
ferredoxin, 2Fe-2S
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
A3-16-all-fractions_k255_3834227_15
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9835..10452
DNA (618bp) protein (206aa)
alpha/beta hydrolase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000345A084
hypothetical protein
Putative hydrolase of the alpha/beta-hydrolase fold protein {ECO:0000313|EMBL:EWS54969.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
A3-16-all-fractions_k255_3834227_16
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10467..11618
DNA (1152bp) protein (384aa)
dacC; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase DacC {ECO:0000313|EMBL:BAL97746.1}; EC=3.4.16.4 {ECO:0000313|EMBL:BAL97746.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
D-alanyl-D-alanine carboxypeptidase DacC n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HXK9_RUBGI
A3-16-all-fractions_k255_3834227_17
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11886..12305
DNA (420bp) protein (140aa)
branched subunit Amino acid: 2-keto-4-methylthiobutyrate aminotransferase (EC:2.6.1.-)
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQ57_9BURK
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase {ECO:0000313|EMBL:EHR73276.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
Displaying 17 items

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