ggKbase home page

A3-16-all-fractions_k255_4473360

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-16-all-fractions_k255_4473360_1
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2..256
DNA (255bp) protein (85aa)
50S ribosomal protein L19 n=1 Tax=Duganella zoogloeoides RepID=UPI00037B8293
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
rplS; 50S ribosomal protein L19
A3-16-all-fractions_k255_4473360_2
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

378..1505
DNA (1128bp) protein (376aa)
Saccharopine dehydrogenase n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RN58_COMTE
Saccharopine dehydrogenase {ECO:0000313|EMBL:EHN66208.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
putative saccharopine dehydrogenase and relateds oxidoreductase protein
A3-16-all-fractions_k255_4473360_3
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1609..2373
DNA (765bp) protein (255aa)
Putative hydrolase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNV5_RUBGI
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAL94692.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
A3-16-all-fractions_k255_4473360_4
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2430..3419
DNA (990bp) protein (330aa)
cbiB; cobalamin biosynthesis protein CbiB (EC:6.3.1.10)
cobalamin biosynthesis protein CbiB, partial n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B690DC
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
A3-16-all-fractions_k255_4473360_5
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3430..5463
DNA (2034bp) protein (678aa)
Pyruvate phosphate dikinase, PEP/pyruvate binding domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XBM5_9BURK
Pyruvate phosphate dikinase, PEP/pyruvate binding domain protein {ECO:0000313|EMBL:EFF75811.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein
A3-16-all-fractions_k255_4473360_6
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5478..6407)
DNA (930bp) protein (310aa)
rsgA; putative ribosome biogenesis GTPase RsgA (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNV7_RUBGI
A3-16-all-fractions_k255_4473360_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6404..7747)
DNA (1344bp) protein (448aa)
Zn-dependent protease with chaperone function n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WM19_9BURK
Zn-dependent protease with chaperone function {ECO:0000313|EMBL:EHR71904.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
membrane protein
A3-16-all-fractions_k255_4473360_8
Eimeria brunetti, Eimeria, Eucoccidiorida, Coccidia, Apicomplexa, Eukaryota

Not on your lists

7922..9286
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Eimeria brunetti RepID=U6LU95_9EIME
Uncharacterized protein {ECO:0000313|EMBL:CDJ52843.1}; TaxID=51314 species="Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Eimeriidae; Eimeria.;" source="Eimeria brunetti.;"
dihydrolipoamide acetyltransferase
A3-16-all-fractions_k255_4473360_9
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9398..9757
DNA (360bp) protein (120aa)
Photosystem reaction center subunit H n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HU98_9SPHN
prc-barrel domain-containing protein
Photosystem reaction center subunit H {ECO:0000313|EMBL:EQB16697.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
A3-16-all-fractions_k255_4473360_10
unknown

Not on your lists

comp(9806..10240)
DNA (435bp) protein (145aa)

This feature has no annotations

A3-16-all-fractions_k255_4473360_11
unknown

Not on your lists

comp(10372..10614)
DNA (243bp) protein (81aa)

This feature has no annotations

A3-16-all-fractions_k255_4473360_12
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10805..11365
DNA (561bp) protein (187aa)
orn; oligoribonuclease Orn (EC:3.1.-.-)
Oligoribonuclease {ECO:0000256|HAMAP-Rule:MF_00045}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00045};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Oligoribonuclease n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LN38_9BURK
A3-16-all-fractions_k255_4473360_13
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11370..11954)
DNA (585bp) protein (195aa)
GNAT family acetyltransferase n=1 Tax=Pseudomonas fluorescens RepID=UPI00037EC1CB
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFQ64168.1}; TaxID=746360 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens WH6.;"
acetyltransferase, GNAT family
A3-16-all-fractions_k255_4473360_14
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11951..12487)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U0ZVR6_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:ERE13396.1}; TaxID=1388764 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans EGD-HP2.;"
hypothetical protein
A3-16-all-fractions_k255_4473360_15
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12484..13200)
DNA (717bp) protein (239aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WM17_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR71902.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
hypothetical protein
A3-16-all-fractions_k255_4473360_16

Not on your lists

comp(13523..14227)
DNA (705bp) protein (235aa)
OmpW-family exported protein n=1 Tax=mine drainage metagenome RepID=T1BHJ5_9ZZZZ
OmpW-family exported protein {ECO:0000313|EMBL:EQD72466.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
OmpW family protein
A3-16-all-fractions_k255_4473360_17
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14240..16009)
DNA (1770bp) protein (590aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VNB0_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM37138.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
A3-16-all-fractions_k255_4473360_18
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16178..18208
DNA (2031bp) protein (677aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000369E70A
Peptidase M13 {ECO:0000313|EMBL:KGF79288.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
peptidase M13 family protein
A3-16-all-fractions_k255_4473360_19
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18321..19052
DNA (732bp) protein (244aa)
Putative uncharacterized protein n=1 Tax=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) RepID=A0KLZ8_AERHH
Uncharacterized protein {ECO:0000313|EMBL:KIF79785.1}; TaxID=709839 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
ABC transporter substrate-binding protein
A3-16-all-fractions_k255_4473360_20
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19148..22285
DNA (3138bp) protein (1046aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003658EE0
PAS domain-containing protein
A3-16-all-fractions_k255_4473360_21
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22364..23758)
DNA (1395bp) protein (465aa)
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018238}; Short=Glu-Q-RSs {ECO:0000256|HAMAP-Rule:MF_01428};; EC=6.1.1.- {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018222};; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
glutamate--tRNA ligase (EC:6.1.1.17)
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI0003737C27
A3-16-all-fractions_k255_4473360_22
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23755..24756)
DNA (1002bp) protein (334aa)
Transcriptional regulator n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WM14_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EHR71899.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
LysR family transcriptional regulator
A3-16-all-fractions_k255_4473360_23
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24753..25808)
DNA (1056bp) protein (352aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJR8_9BURK
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EHR70626.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
alpha/beta hydrolase
A3-16-all-fractions_k255_4473360_24
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25808..26614)
DNA (807bp) protein (269aa)
UPF0176 protein KYG_18234 n=1 Tax=Acidovorax sp. NO-1 RepID=H0C1U7_9BURK
hypothetical protein
Tax=GWA2_Burkholderiales_64_37_curated
A3-16-all-fractions_k255_4473360_25
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26716..28419
DNA (1704bp) protein (568aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
dnaE; DNA polymerase III alpha subunit DnaE (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LN51_9BURK
Displaying 25 items

View Taxonomy