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A3-18-all-fractions_k255_6546440

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
A3-18-all-fractions_k255_6546440_1
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2..1201
DNA (1200bp) protein (400aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1291006 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter cf. michiganensis LMG 26808.;"
alanyl-tRNA synthetase n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B72933
alaS; alanyl-tRNA synthetase
A3-18-all-fractions_k255_6546440_2
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1210..1674
DNA (465bp) protein (155aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
putative Hollyday junction resolvase (EC:3.1.-.-)
Holliday junction resolvase n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B6BE23
A3-18-all-fractions_k255_6546440_3
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1678..2865
DNA (1188bp) protein (396aa)
YceG family protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T0L2_LEIAQ
YceG family protein {ECO:0000313|EMBL:ERK71013.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
A3-18-all-fractions_k255_6546440_4
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2865..3692
DNA (828bp) protein (276aa)
aroE; hypothetical protein (EC:1.1.1.25)
shikimate dehydrogenase n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B53736
Shikimate dehydrogenase {ECO:0000313|EMBL:AJW79124.1}; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. insidiosus.;"
A3-18-all-fractions_k255_6546440_5
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3695..4948
DNA (1254bp) protein (418aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
chorismate synthase n=1 Tax=Agromyces subbeticus RepID=UPI0003B553C3
chorismate synthase
A3-18-all-fractions_k255_6546440_6
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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4945..5454
DNA (510bp) protein (170aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. insidiosus.;"
aroK; hypothetical protein (EC:2.7.1.71)
shikimate kinase n=1 Tax=Curtobacterium sp. B8 RepID=UPI00034B1576
A3-18-all-fractions_k255_6546440_7
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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5451..6527
DNA (1077bp) protein (359aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] id=7722122 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
A3-18-all-fractions_k255_6546440_8
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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6619..7074
DNA (456bp) protein (152aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; 3-dehydroquinate dehydratase; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. insidiosus.;"
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) RepID=A5CRY7_CLAM3
A3-18-all-fractions_k255_6546440_9
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7135..7695
DNA (561bp) protein (187aa)
elongation factor P n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B35664
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
efp; translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)
A3-18-all-fractions_k255_6546440_10
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7697..8116
DNA (420bp) protein (140aa)
transcription antitermination protein NusB n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003485DB1
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
nusB; transcription termination factor
A3-18-all-fractions_k255_6546440_11
unknown

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comp(8125..8784)
DNA (660bp) protein (220aa)

This feature has no annotations

A3-18-all-fractions_k255_6546440_12
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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8953..9477
DNA (525bp) protein (175aa)
pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase (EC:2.4.2.9)
uracil phosphoribosyltransferase n=1 Tax=Ornithinimicrobium pekingense RepID=UPI0003B6DA3C
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
A3-18-all-fractions_k255_6546440_13
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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9474..10427
DNA (954bp) protein (318aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
pyrB; aspartate carbamoyltransferase (EC:2.1.3.2); K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] id=7722131 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
pyrB; aspartate carbamoyltransferase, catalytic chain
A3-18-all-fractions_k255_6546440_14
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10424..11740
DNA (1317bp) protein (439aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
pyrC; dihydroorotase (EC:3.5.2.3)
dihydroorotase n=1 Tax=Leifsonia sp. 109 RepID=UPI000364A592
A3-18-all-fractions_k255_6546440_15
Agreia bicolorata, Agreia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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11737..12264
DNA (528bp) protein (176aa)
Uncharacterized protein {ECO:0000313|EMBL:KJC65836.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
hypothetical protein id=7722133 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
A3-18-all-fractions_k255_6546440_16
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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12251..13414
DNA (1164bp) protein (388aa)
carA; carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209, ECO:0000313|EMBL:CCE75708.1};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5B9A4_9MICO
A3-18-all-fractions_k255_6546440_17
unknown

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13407..13475
DNA (69bp) protein (23aa)

This feature has no annotations

Displaying 17 items

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