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H1-16-all-fractions_k255_1087395

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H1-16-all-fractions_k255_1087395_1
unknown

Not on your lists

comp(1..60)
DNA (60bp) protein (20aa)

This feature has no annotations

H1-16-all-fractions_k255_1087395_2
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(124..321)
DNA (198bp) protein (66aa)
Uncharacterized protein n=3 Tax=Amycolatopsis mediterranei RepID=G0FTR0_AMYMS
Uncharacterized protein {ECO:0000313|EMBL:EWC63304.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
hypothetical protein
H1-16-all-fractions_k255_1087395_3
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(385..1533)
DNA (1149bp) protein (383aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Arthrobacter sp. 135MFCol5.1 RepID=UPI00036F2F94
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
H1-16-all-fractions_k255_1087395_4
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1566..2858)
DNA (1293bp) protein (431aa)
Peptidase M50 n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLM0_NOCSJ
peptidase M50
Peptidase M50 {ECO:0000313|EMBL:ABL82705.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
H1-16-all-fractions_k255_1087395_5
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2858..3970)
DNA (1113bp) protein (371aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLM1_NOCSJ
H1-16-all-fractions_k255_1087395_6
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3967..4479)
DNA (513bp) protein (171aa)
NUDIX hydrolase n=1 Tax=Kribbella catacumbae RepID=UPI0003810541
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ADB32284.1}; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
H1-16-all-fractions_k255_1087395_7
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4476..5939)
DNA (1464bp) protein (488aa)
Aldehyde Dehydrogenase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FBT1_CONWI
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EWT01469.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
aldehyde dehydrogenase
H1-16-all-fractions_k255_1087395_8
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5962..6813
DNA (852bp) protein (284aa)
Periplasmic binding protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SF95_NOCSJ
periplasmic binding protein
Periplasmic binding protein {ECO:0000313|EMBL:ABL80480.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
H1-16-all-fractions_k255_1087395_9
Gordonia malaquae, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6970..7809
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Gordonia malaquae NBRC 108250 RepID=M3VBM2_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:GAC80508.1}; TaxID=1223542 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia malaquae NBRC 108250.;"
serine/threonine protein kinase
H1-16-all-fractions_k255_1087395_10
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7810..8997)
DNA (1188bp) protein (396aa)
Glycosyl transferase, group 1 n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLQ3_NOCSJ
Glycosyltransferase {ECO:0000313|EMBL:GAM44806.1}; TaxID=37332 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
group 1 glycosyl transferase
H1-16-all-fractions_k255_1087395_11
Arthrobacter nitrophenolicus, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9105..10223
DNA (1119bp) protein (373aa)
Rossmann fold nucleotide-binding protein n=1 Tax=Arthrobacter sp. SJCon RepID=L8TUI9_9MICC
Rossmann fold nucleotide-binding protein {ECO:0000313|EMBL:ELT45411.1}; TaxID=683150 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter nitrophenolicus.;"
Rossmann fold nucleotide-binding protein
H1-16-all-fractions_k255_1087395_12
Aeromicrobium marinum, Aeromicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10113..11267)
DNA (1155bp) protein (385aa)
Adenylate/guanylate cyclase catalytic domain protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=E2S8L1_9ACTO
Adenylate/guanylate cyclase catalytic domain protein {ECO:0000313|EMBL:EFQ84516.1}; TaxID=585531 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Aeromicrobium.;" source="Aeromicrobium marinum DSM 15272.;"
adenylate cyclase
H1-16-all-fractions_k255_1087395_13
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11236..11637)
DNA (402bp) protein (134aa)
UPI0003C7E0D2 related cluster n=1 Tax=unknown RepID=UPI0003C7E0D2
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:EON25765.1}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
cyclic nucleotide-binding protein
H1-16-all-fractions_k255_1087395_14
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11824..13671
DNA (1848bp) protein (616aa)
UPI0003C7EE93 related cluster n=1 Tax=unknown RepID=UPI0003C7EE93
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY18208.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
H1-16-all-fractions_k255_1087395_15
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13737..14861)
DNA (1125bp) protein (375aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000255|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000255|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000255|HAMAP-Rule:MF_01849}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=RLMN_NOCSJ
ribosomal RNA large subunit methyltransferase N
H1-16-all-fractions_k255_1087395_16
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(14902..15690)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Ornithinimicrobium pekingense RepID=UPI0003B40E1C
hypothetical protein
Tax=RBG_16_RIF_CHLX_70_13_curated
H1-16-all-fractions_k255_1087395_17
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15735..16613)
DNA (879bp) protein (293aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938, ECO:0000313|EMBL:AIY18216.1}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938, ECO:0000313|EMBL:AIY18216.1};; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
Phosphatidate cytidylyltransferase n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLQ6_NOCSJ
phosphatidate cytidylyltransferase
H1-16-all-fractions_k255_1087395_18
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16629..17186)
DNA (558bp) protein (186aa)
Ribosome-recycling factor n=1 Tax=Nocardioides sp. CF8 RepID=R7XVD6_9ACTO
ribosome-recycling factor
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
H1-16-all-fractions_k255_1087395_19
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17196..17915)
DNA (720bp) protein (240aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Nocardioides sp. CF8 RepID=R7XWE3_9ACTO
H1-16-all-fractions_k255_1087395_20
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18061..18870)
DNA (810bp) protein (270aa)
Elongation factor Ts n=1 Tax=Nocardioides sp. CF8 RepID=R7XVH3_9ACTO
elongation factor Ts
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
H1-16-all-fractions_k255_1087395_21
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(18875..19951)
DNA (1077bp) protein (359aa)
30S ribosomal protein S2 n=1 Tax=Nocardioides sp. CF8 RepID=R7XVC3_9ACTO
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
30S ribosomal protein S2P
H1-16-all-fractions_k255_1087395_22
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20330..20887
DNA (558bp) protein (186aa)
Peptidase M23B n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLR1_NOCSJ
peptidase M23B
Peptidase M23B {ECO:0000313|EMBL:ABL82746.1}; Flags: Precursor;; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
H1-16-all-fractions_k255_1087395_23
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20890..21801)
DNA (912bp) protein (304aa)
Tyrosine recombinase XerC n=1 Tax=Nocardioides sp. CF8 RepID=R7XVE2_9ACTO
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
recombinase XerC
H1-16-all-fractions_k255_1087395_24
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21815..22996)
DNA (1182bp) protein (394aa)
DNA protecting protein DprA n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLR3_NOCSJ
DNA protecting protein DprA
DNA protecting protein DprA {ECO:0000313|EMBL:ABL82748.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
H1-16-all-fractions_k255_1087395_25
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22993..24585)
DNA (1593bp) protein (531aa)
Mg chelatase, subunit ChlI n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLR4_NOCSJ
Mg chelatase subunit ChlI
Mg chelatase, subunit ChlI {ECO:0000313|EMBL:ABL82749.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
H1-16-all-fractions_k255_1087395_26
Streptomyces katrae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24585..24962)
DNA (378bp) protein (126aa)
UPF0102 protein SSAG_01681 n=1 Tax=Streptomyces sp. Mg1 RepID=B4V1Q3_9ACTO
UPF0102 protein VR44_04010 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=68223 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces katrae.;"
hypothetical protein
H1-16-all-fractions_k255_1087395_27
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25092..26732)
DNA (1641bp) protein (547aa)
Membrane protein-like protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLR7_NOCSJ
hypothetical protein
Membrane protein-like protein {ECO:0000313|EMBL:ABL82752.1}; Flags: Precursor;; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
H1-16-all-fractions_k255_1087395_28
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26732..27181)
DNA (450bp) protein (150aa)
TadE family protein n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLR8_NOCSJ
TadE family protein
TadE family protein {ECO:0000313|EMBL:ABL82753.1}; Flags: Precursor;; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
H1-16-all-fractions_k255_1087395_29
unknown

Not on your lists

comp(27284..29062)
DNA (1779bp) protein (593aa)

This feature has no annotations

H1-16-all-fractions_k255_1087395_30
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29074..29532)
DNA (459bp) protein (153aa)
TadE-like protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RX26_9SPHN
TadE-like protein
TadE-like protein {ECO:0000313|EMBL:AGH48096.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Displaying items 1-30 of 34 in total

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