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H1-16-all-fractions_k255_6168979

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H1-16-all-fractions_k255_6168979_1
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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1..270
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) RepID=C7NJ24_KYTSD
Putative HNH endonuclease domain protein {ECO:0000313|EMBL:AJR18302.1}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
hypothetical protein
H1-16-all-fractions_k255_6168979_2
unknown

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325..486
DNA (162bp) protein (54aa)

This feature has no annotations

H1-16-all-fractions_k255_6168979_3
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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483..2150
DNA (1668bp) protein (556aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123, ECO:0000313|EMBL:AIY17052.1};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI000378B177
arginyl-tRNA synthetase
H1-16-all-fractions_k255_6168979_4
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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2153..3568
DNA (1416bp) protein (472aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
Diaminopimelate decarboxylase n=1 Tax=Nocardioides sp. CF8 RepID=R7XZT0_9ACTO
diaminopimelate decarboxylase
H1-16-all-fractions_k255_6168979_5
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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3576..4883
DNA (1308bp) protein (436aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
Homoserine dehydrogenase n=1 Tax=Nocardioides sp. CF8 RepID=R7XYZ5_9ACTO
homoserine dehydrogenase
H1-16-all-fractions_k255_6168979_6
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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4880..5944
DNA (1065bp) protein (355aa)
L-threonine synthase (EC:4.2.3.1)
Threonine synthase {ECO:0000256|PIRNR:PIRNR038945}; EC=4.2.3.1 {ECO:0000256|PIRNR:PIRNR038945};; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
Threonine synthase n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SHH3_NOCSJ
H1-16-all-fractions_k255_6168979_7
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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5944..6852
DNA (909bp) protein (303aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=1844 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
homoserine kinase (EC:2.7.1.39)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI0003698DF0
H1-16-all-fractions_k255_6168979_8
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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7010..8830
DNA (1821bp) protein (607aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
Transcription termination factor Rho n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SHH5_NOCSJ
transcription termination factor Rho
H1-16-all-fractions_k255_6168979_9
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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8964..9335
DNA (372bp) protein (124aa)
Response regulator receiver n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SHH6_NOCSJ
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:ABL81261.1}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
H1-16-all-fractions_k255_6168979_10
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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9455..9688
DNA (234bp) protein (78aa)
50S ribosomal protein L31 n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=RL31_NOCSJ
rpmE; 50S ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=1193518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
H1-16-all-fractions_k255_6168979_11
Nocardioides sp. CF8, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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9770..10855
DNA (1086bp) protein (362aa)
Peptide chain release factor 1 n=1 Tax=Nocardioides sp. CF8 RepID=R7XYZ9_9ACTO
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=110319 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. CF8.;"
prfA; peptide chain release factor 1
H1-16-all-fractions_k255_6168979_12
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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10858..11706
DNA (849bp) protein (283aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI0003770531
HemK family modification methylase
H1-16-all-fractions_k255_6168979_13
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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11717..12406
DNA (690bp) protein (230aa)
hypothetical protein n=1 Tax=Nocardioides sp. Iso805N RepID=UPI0003663DDE
translation factor Sua5
TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA {ECO:0000313|EMBL:AIY17064.2}; TaxID=2045 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
H1-16-all-fractions_k255_6168979_14
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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12399..13292
DNA (894bp) protein (298aa)
Glycosyl transferase, family 4 n=1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SHI2_NOCSJ
glycosyl transferase family protein
Glycosyl transferase, family 4 {ECO:0000313|EMBL:ABL81267.1}; Flags: Precursor;; TaxID=196162 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
Displaying 14 items

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