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H1-18-all-fractions_k255_200060

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H1-18-all-fractions_k255_200060_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..391)
DNA (390bp) protein (130aa)
Type II secretion system protein E n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CT54_VARPS
type II secretion system protein E
Type II secretion system protein E {ECO:0000313|EMBL:ACS18179.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
H1-18-all-fractions_k255_200060_2
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(423..1580)
DNA (1158bp) protein (386aa)
Putative response regulator receiver protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X851_VARPD
Type II/IV secretion system ATPase TadZ/CpaE
Type II/IV secretion system ATPase TadZ/CpaE {ECO:0000313|EMBL:AIY42967.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
H1-18-all-fractions_k255_200060_3
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1609..2055)
DNA (447bp) protein (149aa)
pilus assembly protein TadE n=1 Tax=Variovorax paradoxus RepID=UPI0003685557
TadZ/CpaE-like protein
TadZ/CpaE-like protein {ECO:0000313|EMBL:AIY42966.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
H1-18-all-fractions_k255_200060_4
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2052..2489)
DNA (438bp) protein (146aa)
pilus assembly protein TadE n=1 Tax=Variovorax paradoxus RepID=UPI000366DFD4
TadZ/CpaE-like protein
TadZ/CpaE-like protein {ECO:0000313|EMBL:AIY42965.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
H1-18-all-fractions_k255_200060_5
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2494..3795)
DNA (1302bp) protein (434aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035CA3A0
Von Willebrand factor type A domain protein
Von Willebrand factor type A domain protein {ECO:0000313|EMBL:AIY42964.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
H1-18-all-fractions_k255_200060_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3877..4083)
DNA (207bp) protein (69aa)
pilus subunit protein PilA n=1 Tax=Variovorax paradoxus RepID=UPI00035DEA29
Variovorax paradoxus strain MEDvA23 contig_61, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ26116.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
H1-18-all-fractions_k255_200060_7
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4208..4405)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WWM0_COMTE
pilus subunit protein PilA
Pilus subunit protein PilA {ECO:0000313|EMBL:AIJ46704.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
H1-18-all-fractions_k255_200060_8
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4452..4715)
DNA (264bp) protein (88aa)
tRNA dimethylallyltransferase (EC:2.5.1.75)
tRNA dimethylallyltransferase {ECO:0000313|EMBL:AIY42961.1}; EC=2.5.1.75 {ECO:0000313|EMBL:AIY42961.1};; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2K8B1_9BURK
H1-18-all-fractions_k255_200060_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4725..6266)
DNA (1542bp) protein (514aa)
Flp pilus assembly protein, secretin CpaC n=1 Tax=Variovorax sp. CF313 RepID=J3CR02_9BURK
Flp pilus assembly protein, secretin CpaC {ECO:0000313|EMBL:EJL76471.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type II and III secretion system protein
H1-18-all-fractions_k255_200060_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6304..7140)
DNA (837bp) protein (279aa)
Flp pilus assembly protein CpaB n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CT44_VARPS
Flp pilus assembly protein CpaB
Flp pilus assembly protein CpaB {ECO:0000313|EMBL:ACS18169.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
H1-18-all-fractions_k255_200060_11
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7168..7752)
DNA (585bp) protein (195aa)
Peptidase A24A prepilin type IV n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CT43_VARPS
Type IV prepilin peptidase TadV/CpaA
Type IV prepilin peptidase TadV/CpaA {ECO:0000313|EMBL:AIY42958.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
H1-18-all-fractions_k255_200060_12
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8066..8785)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00037473BD
Nitrate/nitrite response regulator protein {ECO:0000313|EMBL:EZP40185.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
putative two component transcriptional regulator, LuxR family
H1-18-all-fractions_k255_200060_13
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8796..10460)
DNA (1665bp) protein (555aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI000365EC30
two-component system sensor kinase
Two-component system sensor kinase {ECO:0000313|EMBL:AIY42972.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
H1-18-all-fractions_k255_200060_14
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10895..11767
DNA (873bp) protein (291aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit (EC:6.4.1.2)
acetyl-CoA carboxylase carboxyl transferase subunit beta n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00035E1E4C
H1-18-all-fractions_k255_200060_15
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11822..13117
DNA (1296bp) protein (432aa)
folylpolyglutamate synthase n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00035DC689
FolC protein {ECO:0000313|EMBL:KFC66028.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
folC; folC bifunctional family protein
H1-18-all-fractions_k255_200060_16
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13130..14149
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI000347B665
Uncharacterized protein {ECO:0000313|EMBL:KGF81582.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
sporulation related domain protein
H1-18-all-fractions_k255_200060_17
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14192..14680
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DVF9_9BURK
Colicin V production transmembrane protein {ECO:0000313|EMBL:KFC66030.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
cvpA; colicin V production transmembrane protein
H1-18-all-fractions_k255_200060_18
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14729..16249
DNA (1521bp) protein (507aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
purF; amidophosphoribosyltransferase (EC:2.4.2.14)
amidophosphoribosyltransferase n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00036C69E6
H1-18-all-fractions_k255_200060_19
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16254..17501
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium JGI 0001004-K23 RepID=UPI00036692CC
Uncharacterized protein {ECO:0000313|EMBL:KHA78313.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
cys/Met metabolism PLP-dependent enzyme family protein
H1-18-all-fractions_k255_200060_20
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17524..18276
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DZP0_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EKU82685.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG 45783.;"
Sel1 domain-containing protein repeat-containing protein
Displaying 20 items

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