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H1-18-all-fractions_k255_6411489_71

Organism: H1-18-all-fractions_conc_96

near complete RP 31 / 55 BSCG 49 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: comp(83322..84575)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=3 Tax=Amycolatopsis mediterranei RepID=D8I743_AMYMU similarity UNIREF
DB: UNIREF100
  • Identity: 45.4
  • Coverage: 414.0
  • Bit_score: 315
  • Evalue 5.70e-83
RNA polymerase sigma factor {ECO:0000313|EMBL:KDN17172.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.4
  • Coverage: 427.0
  • Bit_score: 317
  • Evalue 1.60e-83
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 45.4
  • Coverage: 414.0
  • Bit_score: 315
  • Evalue 1.60e-83

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Taxonomy

Amycolatopsis rifamycinica → Amycolatopsis → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1254
GTGGTCGAGGTCCTCAGCGGGCCCGTTGGTGGCGGCCAGCCAAGTGACCAGCCGACGGACGCCGAGTTGATCGCCGCCGTGCGCCGCGGTGACACCCGTGCCTACGGTTTGCTGTATGAACGGCACCTCGCCGTGGCCAAGCGGGCGGCCAGCTGCCTTGCCGCGACCCCGGCCGAGCGGGAGGACCTGGTGGCCGAGGGGTTCACCCGGGTCCTCCAGACGCTGCGCAGCGGCCGCGGCCCGGACCTGGACTTCCGCCCTTACCTGCTGGTGACCCTGCGCCACCTGGCGATCAACGCGGCGCGGCGCACCCCCAACACCGCGCTGTTCGCGGACGTGCCGGACACCTACCTGCCGCAGCACGACGACCCGACGGACGCGCGGCTGCGCGGCTCCGAGGCCGCCGCCGCGTTCGCCGAGCTGCCACAACGCTGGCGGGTCGTGCTCTGGCACACCGAGGTGGAGGGCGAGTCGCCCGCGGCCATCGCACCCATGCTCGGCATGACCCCCAATGGAGTCGCGGCCCTCGCCTACCGGGCCCGCGAGGGGTTGCGCCAGGCCTACCTGCGCGCGCACCTGCCGGCGGTGCAACGCCGGGAGTGCCGAAAGGCCGCCGACAAGCTCGCCGCCTGGGTGCGCGGCAGCATCTCCCCGCCGCAGCAGCGAAAGGTCTCCGCGCACCTGGAACGCTGCCCGCACTGCCGGGCGCTGGCCGATGACCTTGCCGAGGTCAACGGTGAGCTGCGGGCCATCCTGCCGCCGATCGTGCTCGGTGCGCCCGCGCTGTCCTGGTTGACCACCGTGAAGATCGGTGTGGCGGCCGCCTTCGCGGCGGTGACCGCGGTGACCGTGGTGTCGTCTCAGCCGTCGGTCGAGGCGCCGTCCGCCGGTGCGCCGATCGCCGTGCCGGCCATCGGGCAACAGCCGGGGCGGGCGGTGACCGGGGTGACGGTGCCGGTCCGGCCCGCGACCGGCCGCGCGGACGCCGGCCCACCGGCCGACCAGCCAGCTCAGTCCGAAGTAGCCGAAGCGCCGATCGAAGATGGCGCATCGGCCGACAAGAAGCCGAAGAAACCCAAGAAGCCGAAGAAGAACGACACCCGAGCGGCGCCACCCGATTCGCCGGGACAGAGCGACGAGCAAGAGGCGCCGGCCGAGCCGCCGGAACAGTCCGACCCGCCGGACGACGGCCAGGGACACGCGCACGGTGCCGCCGAGCCGCCCGCGCCCGCTGCCCAACCGGGAAACAGGTGA
PROTEIN sequence
Length: 418
VVEVLSGPVGGGQPSDQPTDAELIAAVRRGDTRAYGLLYERHLAVAKRAASCLAATPAEREDLVAEGFTRVLQTLRSGRGPDLDFRPYLLVTLRHLAINAARRTPNTALFADVPDTYLPQHDDPTDARLRGSEAAAAFAELPQRWRVVLWHTEVEGESPAAIAPMLGMTPNGVAALAYRAREGLRQAYLRAHLPAVQRRECRKAADKLAAWVRGSISPPQQRKVSAHLERCPHCRALADDLAEVNGELRAILPPIVLGAPALSWLTTVKIGVAAAFAAVTAVTVVSSQPSVEAPSAGAPIAVPAIGQQPGRAVTGVTVPVRPATGRADAGPPADQPAQSEVAEAPIEDGASADKKPKKPKKPKKNDTRAAPPDSPGQSDEQEAPAEPPEQSDPPDDGQGHAHGAAEPPAPAAQPGNR*