ggKbase home page

H2-16-all-fractions_k255_6508876

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H2-16-all-fractions_k255_6508876_1
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

675..1736
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria (strain MC40-6) RepID=B1YWW2_BURA4
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
H2-16-all-fractions_k255_6508876_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1742..2170)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000372E3EC
CBS domain-containing protein
CBS domain-containing protein {ECO:0000313|EMBL:AJP73773.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
H2-16-all-fractions_k255_6508876_3
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2241..2528
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD088C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA94424.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
H2-16-all-fractions_k255_6508876_4
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2525..2905
DNA (381bp) protein (127aa)
Thioesterase superfamily protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVP4_9SPHN
thioesterase superfamily protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
H2-16-all-fractions_k255_6508876_5
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2909..3538)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SGY1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO39829.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
H2-16-all-fractions_k255_6508876_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3776..4603)
DNA (828bp) protein (276aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A377
SAM-dependent methyltransferase
H2-16-all-fractions_k255_6508876_7
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4600..5685)
DNA (1086bp) protein (362aa)
Peptide chain release factor 1 n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=RF1_SPHWW
prfA; peptide chain release factor 1
Peptide chain release factor 1 {ECO:0000255|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000255|HAMAP-Rule:MF_00093};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
H2-16-all-fractions_k255_6508876_8
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(5682..6989)
DNA (1308bp) protein (436aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0I341_9SPHN
H2-16-all-fractions_k255_6508876_9
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7027..9729)
DNA (2703bp) protein (901aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDBD8
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAO38090.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
TonB-dependent receptor
H2-16-all-fractions_k255_6508876_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9830..11764
DNA (1935bp) protein (645aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00038088DB
M61 glycyl aminopeptidase family protein {ECO:0000313|EMBL:EZP49332.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
peptidase M61
H2-16-all-fractions_k255_6508876_11
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11787..13307
DNA (1521bp) protein (507aa)
amidase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B4B0E4
amidase
Amidase {ECO:0000313|EMBL:ADG09762.1}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
H2-16-all-fractions_k255_6508876_12
Synechococcus sp. PCC 7502, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(13308..14273)
DNA (966bp) protein (322aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Synechococcus sp. PCC 7502 RepID=K9ST10_9SYNE
Zn-dependent hydrolase
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:AFY73265.1}; Flags: Precursor;; TaxID=1173263 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp. PCC 7502.;"
H2-16-all-fractions_k255_6508876_13
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14275..14589)
DNA (315bp) protein (105aa)
Small multidrug resistance protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V865_SPHWW
small multidrug resistance protein
Small multidrug resistance protein {ECO:0000313|EMBL:ABQ68481.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
H2-16-all-fractions_k255_6508876_14
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14640..15284
DNA (645bp) protein (215aa)
membrane protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5289F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ68482.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
H2-16-all-fractions_k255_6508876_15
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15291..16193)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S065_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH49385.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_6508876_16
unknown

Not on your lists

comp(16211..16336)
DNA (126bp) protein (42aa)

This feature has no annotations

H2-16-all-fractions_k255_6508876_17
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16377..17507)
DNA (1131bp) protein (377aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184190}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489370
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
H2-16-all-fractions_k255_6508876_18
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17618..19759
DNA (2142bp) protein (714aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000300F289
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
H2-16-all-fractions_k255_6508876_19
unknown

Not on your lists

19772..20239
DNA (468bp) protein (156aa)

This feature has no annotations

H2-16-all-fractions_k255_6508876_20
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20262..22103
DNA (1842bp) protein (614aa)
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TK50_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK53138.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
H2-16-all-fractions_k255_6508876_21
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22100..22345)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4PDW2_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ83520.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
hypothetical protein
H2-16-all-fractions_k255_6508876_22
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22342..22548)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035C83D6
Sphingomonas taxi strain 30a NODE_36, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26275.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
H2-16-all-fractions_k255_6508876_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22558..23460)
DNA (903bp) protein (301aa)
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003131F26
membrane protein
Membrane protein {ECO:0000313|EMBL:AJP73033.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
H2-16-all-fractions_k255_6508876_24
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23553..24479
DNA (927bp) protein (309aa)
asparaginase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD00D
DNA, contig: SP657 {ECO:0000313|EMBL:GAN15427.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
asparaginase
H2-16-all-fractions_k255_6508876_25
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24455..25594)
DNA (1140bp) protein (380aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X1K4_9SPHN
DNA, contig: SP623 {ECO:0000313|EMBL:GAN13721.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
H2-16-all-fractions_k255_6508876_26
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25627..26088)
DNA (462bp) protein (154aa)
Endoribonuclease L-PSP n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SHR5_9SPHN
Endoribonuclease {ECO:0000313|EMBL:KEO86614.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
endoribonuclease L-PSP
H2-16-all-fractions_k255_6508876_27
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26121..26867)
DNA (747bp) protein (249aa)
Short chain dehydrogenase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X091_9SPHN
DNA, contig: SP626 {ECO:0000313|EMBL:GAN13771.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
oxidoreductase
H2-16-all-fractions_k255_6508876_28
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26957..27637
DNA (681bp) protein (227aa)
chemotaxis protein CheY n=1 Tax=Sphingobium xenophagum RepID=UPI0002FE7396
Chemotaxis protein CheV {ECO:0000313|EMBL:CCW18459.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
putative response regulator receiver protein
H2-16-all-fractions_k255_6508876_29
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(27656..27823)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=2 Tax=Sphingobium RepID=T0HDZ7_9SPHN
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
rpmG; ribosomal protein L33
H2-16-all-fractions_k255_6508876_30
unknown

Not on your lists

27977..28285
DNA (309bp) protein (103aa)

This feature has no annotations

Displaying items 1-30 of 41 in total

View Taxonomy