ggKbase home page

H2-16-all-fractions_k255_9117897

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
H2-16-all-fractions_k255_9117897_1
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..183
DNA (183bp) protein (61aa)
RNA polymerase sigma factor RpoD n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289A98A
RNA polymerase sigma factor RpoD
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
H2-16-all-fractions_k255_9117897_2
unknown

Not on your lists

comp(342..884)
DNA (543bp) protein (181aa)

This feature has no annotations

H2-16-all-fractions_k255_9117897_3
unknown

Not on your lists

1191..1526
DNA (336bp) protein (112aa)

This feature has no annotations

H2-16-all-fractions_k255_9117897_4
unknown

Not on your lists

1628..2236
DNA (609bp) protein (203aa)

This feature has no annotations

H2-16-all-fractions_k255_9117897_5
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

comp(2759..3091)
DNA (333bp) protein (111aa)
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
H2-16-all-fractions_k255_9117897_6
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3270..3842
DNA (573bp) protein (191aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPL3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB11080.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
hypothetical protein
H2-16-all-fractions_k255_9117897_7
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3881..4297
DNA (417bp) protein (139aa)
4-carboxymuconolactone decarboxylase (EC:4.1.1.44)
Germin subfamily 1 member 15 n=1 Tax=Rudaea cellulosilytica RepID=UPI00037B212C
Uncharacterized protein {ECO:0000313|EMBL:GAO38248.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
H2-16-all-fractions_k255_9117897_8
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4367..4807)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000363ADF8
Putative secreted protein
Putative secreted protein {ECO:0000313|EMBL:AJA10683.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
H2-16-all-fractions_k255_9117897_9
unknown

Not on your lists

comp(4928..5119)
DNA (192bp) protein (64aa)

This feature has no annotations

H2-16-all-fractions_k255_9117897_10
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5431..5655)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C5C7_9SPHN
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
H2-16-all-fractions_k255_9117897_11
unknown

Not on your lists

comp(5652..5903)
DNA (252bp) protein (84aa)

This feature has no annotations

H2-16-all-fractions_k255_9117897_12
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6225..6491)
DNA (267bp) protein (89aa)
cold-shock protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030FB6A1
Cold-shock protein {ECO:0000313|EMBL:KHA64206.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
cold-shock protein
H2-16-all-fractions_k255_9117897_13
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6738..7250)
DNA (513bp) protein (171aa)
Putative acetyltransferase n=1 Tax=Sphingobium indicum B90A RepID=I5BFG2_9SPHN
GCN5 family acetyltransferase {ECO:0000313|EMBL:AJR23738.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
putative acetyltransferase
H2-16-all-fractions_k255_9117897_14
unknown

Not on your lists

7418..7591
DNA (174bp) protein (58aa)

This feature has no annotations

H2-16-all-fractions_k255_9117897_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7680..8426
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Sphingomonas RepID=UPI0002882815
Uncharacterized protein {ECO:0000313|EMBL:ENY82893.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
H2-16-all-fractions_k255_9117897_16
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8430..9275)
DNA (846bp) protein (282aa)
Trypsin-like serine protease n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SYH5_9GAMM
peptidase S1B family protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
H2-16-all-fractions_k255_9117897_17
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9275..9763)
DNA (489bp) protein (163aa)
msrB2; peptide methionine sulfoxide reductase MsrB 2 (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrB 2 {ECO:0000313|EMBL:ACP22240.1}; EC=1.8.4.11 {ECO:0000313|EMBL:ACP22240.1};; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
Peptide methionine sulfoxide reductase MsrB 2 n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KQ82_RHISN
H2-16-all-fractions_k255_9117897_18

Not on your lists

9811..11007
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288AA3D
Uncharacterized protein {ECO:0000313|EMBL:AGU09936.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
hypothetical protein
H2-16-all-fractions_k255_9117897_19
Streptomyces natalensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10985..11398)
DNA (414bp) protein (138aa)
panD; aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=1240678 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces natalensis ATCC 27448.;"
Aspartate 1-decarboxylase n=1 Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SAU3_ACTS5
H2-16-all-fractions_k255_9117897_20
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11653..11940
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S8G6_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH50809.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
H2-16-all-fractions_k255_9117897_21
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11944..12615)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V9N1_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:KKC23914.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
hypothetical protein
H2-16-all-fractions_k255_9117897_22
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12777..14174)
DNA (1398bp) protein (466aa)
Methyl-accepting chemotaxis sensory transducer n=2 Tax=Sphingomonas wittichii RepID=A5VDF9_SPHWW
Putative methyl-accepting chemotaxis protein {ECO:0000313|EMBL:GAO38108.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
methyl-accepting chemotaxis sensory transducer
H2-16-all-fractions_k255_9117897_23
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14301..14858)
DNA (558bp) protein (186aa)
TonB-like protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GUZ4_SPHAL
TonB-like protein {ECO:0000313|EMBL:KHS48474.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
TonB-like protein
H2-16-all-fractions_k255_9117897_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14944..16143)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI000263069E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP71833.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
H2-16-all-fractions_k255_9117897_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16154..16690)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CCB7B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP74382.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
H2-16-all-fractions_k255_9117897_26
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16762..17148)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488667
Tax=GWF1_Sphingomonadales_63_6_curated
H2-16-all-fractions_k255_9117897_27
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17164..18384
DNA (1221bp) protein (407aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
tyrosyl-tRNA synthetase n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B52C2A
tyrosyl-tRNA synthetase
H2-16-all-fractions_k255_9117897_28
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18466..20526)
DNA (2061bp) protein (687aa)
ATP-dependent DNA helicase RecG n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488664
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:GAO38836.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
DEAD/DEAH box helicase
H2-16-all-fractions_k255_9117897_29
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20560..20856
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026306A5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP71836.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
H2-16-all-fractions_k255_9117897_30
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20853..24344
DNA (3492bp) protein (1164aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
transcription-repair coupling factor n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488662
transcription-repair coupling factor
Displaying items 1-30 of 35 in total

View Taxonomy